Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq42527 114 2e-20 seq36964 114 2e-20 seq44337 86.0 7e-12 seq43052 84.2 3e-11 seq42022 84.2 3e-11 seq41918 84.2 3e-11 >seq42527 Length=94160 Score = 114 bits (126), Expect = 2e-20 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||||||| || || || || || ||||| || || || || |||||||| || Sbjct 57979 TGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACCG 57920 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| || ||||| || || || || || |||||||| || ||||||||| Sbjct 57919 CGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACAG 57860 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||||||| |||||||| || || | |||| | ||||| ||| || | ||||| Sbjct 57859 GCGAAAGCGACGAGACGCTCCGCGAAGGAGTCG-GTGGCGTCGATCCATTTCAACGCCCA 57801 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCTTTT 119745 | ||| || || | |||||||| |||| | ||| ||| | |||| | |||| Sbjct 57800 CTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGGCGCGGAAGAGGTTGGAT-TTTT 57742 Query 119746 CAGC 119749 |||| Sbjct 57741 CAGC 57738 >seq36964 Length=242943 Score = 114 bits (126), Expect = 2e-20 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||||||| || || || || || ||||| || || || || |||||||| || Sbjct 59762 TGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACCG 59703 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| || ||||| || || || || || |||||||| || ||||||||| Sbjct 59702 CGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACAG 59643 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||||||| |||||||| || || | |||| | ||||| ||| || | ||||| Sbjct 59642 GCGAAAGCGACGAGACGCTCCGCGAAGGAGTCG-GTGGCGTCGATCCATTTCAACGCCCA 59584 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCTTTT 119745 | ||| || || | |||||||| |||| | ||| ||| | |||| | |||| Sbjct 59583 CTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGGCGCGGAAGAGGTTGGAT-TTTT 59525 Query 119746 CAGC 119749 |||| Sbjct 59524 CAGC 59521 >seq44337 Length=285008 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 14022 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 13963 Query 136777 GGGAACAGCTTTTAGATATATTTTTTGTATGTATATGTAAAA 136818 |||| ||||||| | | |||||||| | ||| | ||||| Sbjct 13962 GGGACCAGCTTTCATGT-TATTTTTTAGACCTATTTTTAAAA 13922 >seq43052 Length=6696 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 5303 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 5358 >seq42022 Length=12327 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 11941 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 11996 >seq41918 Length=7750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| |||||||| | |||||| |||||||| ||| || |||||||| | |||| Sbjct 3999 TGAAGGCCTTCATCTCTAGAGATTAGCTCATTTGAGAATGTGAGACCAGGCATCAATCCT 3940 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAA 119608 |||||||| ||||| || |||| |||||| || | || ||| Sbjct 3939 CTTTTCTTAAGCCAGAAAATGGAACAAAAGCTGCGAGCAAA 3899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588648647139200