Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq42083 96.9 4e-15 seq35886 89.7 6e-13 >seq42083 Length=66024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | ||| || |||| |||| Sbjct 46252 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACCA 46193 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| || | || | || || || ||| Sbjct 46192 TTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGAA 46133 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || |||||| ||| || | ||||||| || | ||||||||||| Sbjct 46132 ACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAATC 46073 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || ||||||||||||||| |||| || || || ||||| Sbjct 46072 CCCTCTATACTATCATCTTTCATGCATATAAGGAAGCAACT 46032 >seq35886 Length=22054 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || ||||| || | ||| | ||||||||| || | || | ||||| ||||| || ||| Sbjct 11699 CCCCCTTGGTCAACATAGCGGGCAGTATTATTGAACACGCGCAACATGGGGACGATTCCA 11758 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| |||||||| | || | || || || || Sbjct 11759 TTGGATGTCCCATTAGTCCCACCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAG 11818 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | ||||||| || | || ||||| || Sbjct 11819 ACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCCTTCAAAGTCTCATATATA 11878 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || ||||||||||||||| ||| | |||||| |||||| Sbjct 11879 CCCTCTATACTATCATCTTGCATGCACACTAGAAAGCAACTA 11920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | ||| ||||| |||||| | |||||| | || || ||||| | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| | | | || || ||||| | ||| || || || | || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| ||||| |||| || | || ||||| || || ||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561796379928960