Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1704 134 3e-26 seq42527 127 4e-24 seq36964 127 4e-24 seq32367 105 1e-17 >seq1704 Length=114806 Score = 134 bits (148), Expect = 3e-26 Identities = 379/568 (67%), Gaps = 17/568 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | ||||||||||| || | ||| ||||||||||||||| | || Sbjct 97093 GAAATCTGGCAAATGTACAAGAAAGCCCTCGCCTCCTTCTGGACCGCCGAAGAAGTCGAC 97152 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || | ||| | || |||| || | || | | | ||| | || || ||| Sbjct 97153 CTCTCCCACGACCTCCGCGACTGGGACTCCCTCAACGACGGCGAACGCCACTTCATCACC 97212 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||| ||||| || || Sbjct 97213 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAAAATCTCGCCGGAAGG 97272 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||||| || || || || | | | |||||||| |||||||| ||||| Sbjct 97273 TTCATGAAAGAAGTCCAAATCGCCGAAGC-ACGCGCCTTCTACGGCTTCCAGATCGCCAT 97331 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| || || ||| | || ||||| | ||| Sbjct 97332 CGAGAACATCCACTCCGAGATGTA---CAGCCTCCTGTTAGAAACCTACATCAAGGACTC 97388 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | |||||| | | || || || ||| |||| ||| ||| || || || ||| || Sbjct 97389 CACCGAGAAACACCGCCTCTTCCACGCCGTCGAAACCATCCCCTGCGTCGCGAAGAAAGC 97448 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| ||||| |||||| || || | | | | || | |||||| |||| || Sbjct 97449 CGAGTGGGCGATGAAATGGATCGACG--CATCG-GATTCCTTCGCGGAGCGGGTGGTTGC 97505 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| ||||| || ||||| ||| ||| || |||| | ||||||||| | Sbjct 97506 CTTCGCCTGC-GTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCG-CGATCTTCTGGTTG 97563 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 || | | | || | |||||| ||||| || ||||||||||| ||| | ||||| Sbjct 97564 AAAAA-ACGCGGTCTCATGCCGGGGCTCACGTTCTCCAACGAGCTGATCTCACGCGACGA 97622 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| || ||| | ||||| || ||| || Sbjct 97623 GGGGCTTCACTGCGATTTCGCGTGCTTG 97650 >seq42527 Length=94160 Score = 127 bits (140), Expect = 4e-24 Identities = 380/573 (66%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || || |||||| || || ||| ||||||| Sbjct 57444 ATTTGGGAAATGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTA 57503 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | || | | |||| || | || || | | ||| | || || ||| || Sbjct 57504 TCGTCCGATCTCCGCCACTGGGACTCCCTCACCGACGGCGAACGCCACTTCATCACCCAC 57563 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || ||||| ||| ||||| || || ||| Sbjct 57564 GTCCTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTC 57623 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATCGA 25715 | | |||||| || | || ||||| | | | |||||| | |||||||| || ||||| Sbjct 57624 ATGAAGGAAGTCCAATCCGCCGAGGC-ACGCGCCTTCTACAGCTTCCAGATCGCGATCGA 57682 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 || | ||||| ||| |||| || || ||| | || ||||| | ||| ||| Sbjct 57683 GAACATCCACTCCGAGATGTA---CAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGC 57739 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 || | | || || | ||| | || ||| ||| || |||||| ||| || Sbjct 57740 TGAAAAATCCAACCTCTTCCGCGCCGTGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGA 57799 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| |||| |||||| || |||| | || | || | ||||| || || || || Sbjct 57800 GTGGGCGTTGAAATGGATCGAC-GCCACCGA-CTCC-TTCGCGGAGCGTCTCGTCGCTTT 57856 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || |||||| || ||||| ||| ||| || |||| |||| |||||||| ||| Sbjct 57857 CGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCG-CCATTTTCTGGCTGAAGA 57915 Query 25952 AGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 | | | || | |||||| ||||| |||||||||||||| || | |||||||| Sbjct 57916 A-ACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGG 57974 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || ||| | ||||| || ||| || | ||| || Sbjct 57975 CTTCACTGCGATTTCGCGTGCTTGTTGTACTCG 58007 >seq36964 Length=242943 Score = 127 bits (140), Expect = 4e-24 Identities = 380/573 (66%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || || |||||| || || ||| ||||||| Sbjct 59227 ATTTGGGAAATGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTA 59286 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | || | | |||| || | || || | | ||| | || || ||| || Sbjct 59287 TCGTCCGATCTCCGCCACTGGGACTCCCTCACCGACGGCGAACGCCACTTCATCACCCAC 59346 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || ||||| ||| ||||| || || ||| Sbjct 59347 GTCCTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTC 59406 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATCGA 25715 | | |||||| || | || ||||| | | | |||||| | |||||||| || ||||| Sbjct 59407 ATGAAGGAAGTCCAATCCGCCGAGGC-ACGCGCCTTCTACAGCTTCCAGATCGCGATCGA 59465 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 || | ||||| ||| |||| || || ||| | || ||||| | ||| ||| Sbjct 59466 GAACATCCACTCCGAGATGTA---CAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGC 59522 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 || | | || || | ||| | || ||| ||| || |||||| ||| || Sbjct 59523 TGAAAAATCCAACCTCTTCCGCGCCGTGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGA 59582 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| |||| |||||| || |||| | || | || | ||||| || || || || Sbjct 59583 GTGGGCGTTGAAATGGATCGAC-GCCACCGA-CTCC-TTCGCGGAGCGTCTCGTCGCTTT 59639 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || |||||| || ||||| ||| ||| || |||| |||| |||||||| ||| Sbjct 59640 CGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCG-CCATTTTCTGGCTGAAGA 59698 Query 25952 AGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 | | | || | |||||| ||||| |||||||||||||| || | |||||||| Sbjct 59699 A-ACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGG 59757 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || ||| | ||||| || ||| || | ||| || Sbjct 59758 CTTCACTGCGATTTCGCGTGCTTGTTGTACTCG 59790 >seq32367 Length=12065 Score = 105 bits (116), Expect = 1e-17 Identities = 269/400 (67%), Gaps = 12/400 (3%) Strand=Plus/Minus Query 25647 CGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || ||| |||| | ||||| || | || |||||| |||||||| |||||||| Sbjct 2782 CGGGAGGTTCATGAAGGAAGGCCAATCCGCTGAGGCCCGCGCCTTCTACGGATTCCAGAT 2723 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGA 25766 ||||| || || | ||||| || |||| ||| | || ||||||| || Sbjct 2722 CGCCATTGAGAACATCCACTCGGAAATGTACAGTTTGCTCTTAGAAACCTACATTAAGGA 2663 Query 25767 CGTCGCCGAGAGAGATCGG-CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | ||| |||| ||| | | || || |||| ||||| | || || | | || || Sbjct 2662 CTCCGCGGAGA-AGAGCAGACTCTTCCGTGCAATCGAAACTGTTCCTTGCGTAAGGAAGA 2604 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTT--TGGCG-AGCGG 25881 | || ||||||| |||| |||||| || | |||| ||| || | ||| | ||| Sbjct 2603 AAGCCGAGTGGGCCCTGAAATGGATCCACTCGACAGA----TACTTTCTTCGCGGAACGG 2548 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTT 25940 || || || || || |||||| || ||||| ||| ||| || |||| ||||||| Sbjct 2547 CTTGTCGCGTTCGCGTGTGTGGAAGGAATCTTCTTCTCCGGGAGCTTCTGCG-CCATCTT 2489 Query 25941 CTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 |||||| ||| || || |||||| ||||| || ||||||||||| ||| | | Sbjct 2488 CTGGCTGAAGAAGCGCGGCCTCATGCCGGGGCTAACATTCTCCAACGAGCTGATCTCCCG 2429 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| |||||| | || || || || ||| | ||| Sbjct 2428 TGACGAGGGGCTCCACTGCGACTTCGCGTGTCTGATGTAC 2389 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||||| ||||||||||| || || ||| ||||||||| || ||| | || || Sbjct 3050 ATATGGGAAATGTACAAGAAAGCCGAAGCTTCATTCTGGACCGCTGAGGAGGTCGACCTC 2991 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || | ||| | | |||| || | || || | ||||||| || ||| ||| || Sbjct 2990 TCCGACGACCTCCGCCACTGGAACTCCCTGACCGACGACGAGCGCCACTTTATCACCCAC 2931 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| |||||||| || ||||| || || || | || || || || || ||| Sbjct 2930 GTCCTGGCTTTCTTTGCCGCTTCTGACGGCATTGTCATTGAAAACCTCGCCGGAAGGTTC 2871 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | |||||| || | || ||||| |||||||| |||||||| ||||| || Sbjct 2870 ATGAAGGAAGTCCAATCCGCTGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATTGA 2812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928328548060160