Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq11259 2623 0.0 >seq11259 Length=3298 Score = 2623 bits (2908), Expect = 0.0 Identities = 2574/3304 (78%), Gaps = 21/3304 (1%) Strand=Plus/Minus Query 966 GTTTCTCGAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGGCTGCAAAAAACTACCGTG 1025 ||||| | ||||| ||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 3298 GTTTC-CTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTG 3240 Query 1026 AAAAATCAGTTGATGTGGCTGGCTACGACGAGCTCGCCGCTTTCGATGATGACATCGAGA 1085 |||| || || |||||||| || || || || || || ||||| |||||||| || || Sbjct 3239 AAAAGTCGGTGGATGTGGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAAC 3180 Query 1086 AAGAAGGTTCTCCCACCTTTCTGGGTGATAAGCGTATTGAGGGTTCTGTATGGCCGAAAT 1145 | ||||| ||||| || || |||||||| ||||||||||| || || || ||||| || | Sbjct 3179 AGGAAGGCTCTCCGACGTTCCTGGGTGACAAGCGTATTGAAGGCTCGGTCTGGCCAAAGT 3120 Query 1146 CCATTCGCGGATCTACACCGAAAGTCAAAGGTATGTGCCAGATAGAAAGAGCTGCTAAGG 1205 |||| || || || || || ||||| | ||| | || ||||| || | || || | | Sbjct 3119 CCATCCGTGGCTCCACGCCAAAAGTGAGAGGCACCTGTCAGATTGAGCGTGCAGCCAGTG 3060 Query 1206 AGTCTGAACATTTTCTTCGGTTCCATGTTCCATGCCCACACTGTGGGGAAGAGCAGTATC 1265 | || |||||| | || || |||||| | ||||| || || ||||| |||||||||| Sbjct 3059 AATCCCCGCATTTTATGCGTTTTCATGTTGCCTGCCCGCATTGCGGGGAGGAGCAGTATC 3000 Query 1266 TGAAATTCGGTGATAAAGAGACACCATTTGGCTTCAAATGGTCTCCGGGAGAACCTGCCA 1325 | ||||| || || |||||||| || |||||| |||||||| | |||| || || ||| Sbjct 2999 TTAAATTTGGCGACAAAGAGACGCCGTTTGGCCTCAAATGGACGCCGGATGACCCCTCCA 2940 Query 1326 GCGTTTACTACCTCTGTGAACACAATGCCTGTGTGATTAAACAACAGGAGCTGGAATTTC 1385 ||| || || | ||| || || |||||||| || || || ||||||||||| ||| Sbjct 2939 GCGCTTTTTAACACTGCGAGCATAATGCCTGCGTCATCCGCCAGCAGGAGCTGGACTTTA 2880 Query 1386 TGGAGGCCAGGTATATTTGTGATGAAACAGGTATCTGGACACGAGACGGCCTTAACTGGT 1445 || ||| | ||||| || || | || || |||||||| || || ||| || ||||| Sbjct 2879 CTGATGCCCGTTATATCTGCGAAAAGACCGGGATCTGGACCCGTGATGGCATTCTCTGGT 2820 Query 1446 TTTCTTCATCCGGTACCGAAATTGAACCTCCTGACAGCGTTACATTCCACATCTGGACCG 1505 |||| ||||||||| || ||||| || |||||||| || || || ||||||||||| | Sbjct 2819 TTTCGTCATCCGGTGAAGAGATTGAGCCACCTGACAGTGTGACCTTTCACATCTGGACAG 2760 Query 1506 CATATAGCCCGTTCACAACCTGGGTGCAGATCGTCAAGGACTGGATAAAAACAAAAGGTG 1565 | || ||||||||||| |||||||||||||| ||||| |||||||| ||||| || || | Sbjct 2759 CGTACAGCCCGTTCACCACCTGGGTGCAGATTGTCAAAGACTGGATGAAAACGAAGGG-G 2701 Query 1566 ATACGGGTAAGCGAAAAACTTTCGTTAACACGACCCTGGGCGAAACGTGGGAACCGAAAA 1625 ||||||| || || ||||| ||||| ||||| || || || || |||||||| |||||| Sbjct 2700 ATACGGGAAAACGTAAAACCTTCGTAAACACCACGCTCGGTGAGACGTGGGAGGCGAAAA 2641 Query 1626 TAGGTGAACGACCCGATGCTGAAGTTTTAGCGGAACGAAAAGAGCACTTTGAAGCGTCTG 1685 | || ||||| || ||||||||||| | || || || |||||||| | | |||| | Sbjct 2640 TTGGCGAACGTCCGGATGCTGAAGTGATGGCAGAGCGGAAAGAGCATTATTCAGCGGGGG 2581 Query 1686 TGCCGGAGCGAGTGGCATATCTGACAGCGGGTATTGACTCCCAGCTTGACCGTTACGAAA 1745 ||| || || ||||| || ||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 2580 GGCCTGACCGTGTGGCTTACCTGACCGCCGGTATCGACTCCCAGCTGGACCGCTACGAAA 2521 Query 1746 TGCGTGTTTGGGGATGGGGGCCGGGAGAGGAAAGCTGGCTTATCGACAAAATTATCATTA 1805 |||| || ||||||||||||||||| |||||||||||||| || ||| || |||| Sbjct 2520 TGCGCGTATGGGGATGGGGGCCGGGTGAGGAAAGCTGGCTGATTGACCGGCAGATTATTA 2461 Query 1806 TGGGTCGTCATGATGATGAGTCGACTCTCGCT-CGAGTTGATGAAGCGATCAACAGGACG 1864 |||| || || || ||||| ||| || ||| || || ||||| || ||||| | || Sbjct 2460 TGGGCCGCCACGACGATGAACAGACGCT-GCTGCGTGTGGATGAGGCCATCAATAAAACC 2402 Query 1865 TATAAGCGCCAGAACGGTCTCGAAATGGTTATATCCCGCACTTGCTGGGATATTGGCGGC 1924 |||| |||| ||| ||| |||||| | |||| | |||||||||| |||||| Sbjct 2401 TATACCCGCCGGAATGGTGCAGAAATGTGGAGGGCCCGTATCTGCTGGGATACTGGCGGG 2342 Query 1925 ATTGATCCCACCATCGTCTACAACCGCTCaaaaaaaCACGGTCTGTTTCGTGTGATCCCT 1984 ||||| || ||||| || || | ||||| |||||||| || ||||| || |||||||| Sbjct 2341 ATTGACCCGACCATTGTGTATGAACGCTCGAAAAAACATGGGCTGTTCCGGGTGATCCCC 2282 Query 1985 ATAAAGGGGGCGTCGGTTTATGGAAAGCCAGTGGCGAACATGCCACGCAAGCGTAACAAG 2044 || || ||||| || || || |||||||| ||||| | ||||||||| ||||| ||||| Sbjct 2281 ATTAAAGGGGCATCCGTCTACGGAAAGCCGGTGGCCAGCATGCCACGTAAGCGAAACAAA 2222 Query 2045 AATGGTGTTTACCTCACAGAGGTAGGAACAGACACCGCAAAAGAGCAGATTTATAACCGT 2104 || || |||||||| || || | || || || ||||| |||||||||||||||||||| Sbjct 2221 AACGGGGTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGC 2162 Query 2105 TTCACGCTGGTGGCGCAAAGAGACGAGCCGCTGGCGGGAGCGGTTCATTTCCCGAATAAC 2164 ||||| ||| | || || | || || ||||| | || || ||||| |||||||||||| Sbjct 2161 TTCACACTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAAC 2102 Query 2165 CCAGAAATCTACGATCTAACAGAGGCCCAACAACTAACAGCTGAAGAGCAGGTGGAAAAA 2224 || || || | ||||| || || || || || || || |||||||||||||| |||||| Sbjct 2101 CCGGATATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAA 2042 Query 2225 TGGGTAGACGGAAAGAAAAAGATCGTCTGGGACAGCAAAAAACGACGAAATGAGGCGCTC 2284 ||||| || || | |||||| || | |||||||||||||| ||||| |||||||| ||| Sbjct 2041 TGGGTGGATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTC 1982 Query 2285 GATTGCTTTGTTTATGCACTGGCGGCGCTGCGTATAAGCATATCCCGCTGGCAGCTAAAT 2344 || ||||| |||||||| |||||||||||||| || || || |||||||||||||| || Sbjct 1981 GACTGCTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGAT 1922 Query 2345 CTTGATTCACTTCTGGCCAGCCTGCTGGAGGAAGAAGGCAGCCGTAAC-AATAACAAGAC 2403 || | | || ||||| ||||||| ||| || || || || | ||| || || || || Sbjct 1921 CTCAGTGCGCTGCTGGCGAGCCTGCAGGAAGAGGATGGT-GCAGCAACCAACAAGAAAAC 1863 Query 2404 CCTGGCGGATTACGCGCGGGCATTATCTGGAGATGAATAATGGCAACACAGACTGAACTG 2463 ||||| |||||||| || || ||||| ||||| || |||| | |||| ||||| Sbjct 1862 ACTGGCAGATTACGCCCGTGCCTTATCCGGAGAGGATGAATGACGCGACAGGAAGAACTT 1803 Query 2464 GATGCCGCGCGCGCTGCGTTACATGACCTGATGATGGGAAAGCGCGTGGCGACGGTACAG 2523 | || || || || || | ||||||||||||| || || || ||||| || |||||| Sbjct 1802 GCCGCTGCCCGTGCGGCACTGCATGACCTGATGACAGGTAAACGGGTGGCAACAGTACAG 1743 Query 2524 AAAGACGGTCGAAGAGTGGAATTTACAGCCACTTCAGTCAGCGATCTCAAAAAATATATT 2583 |||||||| ||||| ||||| ||||| |||||||| || || || |||||||||||| Sbjct 1742 AAAGACGGACGAAGGGTGGAGTTTACGGCCACTTCCGTGTCTGACCTGAAAAAATATATT 1683 Query 2584 GCTGACCTTGAATCTCAGGTTGGCACCACATCACGACGCCGGGGGCCAGCAGGGTTTTAC 2643 || || || ||| ||| |||| ||| |||||| |||| || ||||| ||||| Sbjct 1682 GCAGAGCTGGAAGTGCAGACCGGCATGACACAGCGACGCAGGGGACCTGCAGGATTTTAT 1623 Query 2644 GTATGAAAAT----ACCAT-----CTTTGGTGGGACCTGACGGGAAAACATCCCTTCGGG 2694 ||||||||| ||||| | | |||| || ||||| | ||||| || || | Sbjct 1622 GTATGAAAACGCCCACCATTCCCACCCTTCTGGGGCCGGACGGCATGACATCGCTGCGCG 1563 Query 2695 AATACGCAGGATATCATGGCGGTGGAGGCGGGTTTGGTGGGCAGCTGCGAGGCTGGAATC 2754 |||| || || ||||| |||||||| |||| ||||| |||||| |||| ||||| | Sbjct 1562 AATATGCCGGTTATCACGGCGGTGGCAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACC 1503 Query 2755 CGCCGAGTGAAAGTGCAGATGCCGCACTCCTACCCAACTATTCTCGCGGAAATGCCCGCG 2814 | ||||||||||||| ||||| || || | ||||||| | | || || |||||||||| Sbjct 1502 CACCGAGTGAAAGTGTGGATGCAGCCCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCG 1443 Query 2815 CTGACGATCTGGTGCGAAATAATGGCTACGCGGCAAACGCCGTGCAGCTCCACCAGGACC 2874 | ||||||||||| || ||||| ||||| || || |||||| | ||||| || ||||| | Sbjct 1442 CAGACGATCTGGTACGCAATAACGGCTATGCCGCCAACGCCATCCAGCTGCATCAGGATC 1383 Query 2875 ACATCGTCGGGTCATTTTTCAGACTAAGTTATCGACCAAGCTGGCGTTATCTGGGAATAA 2934 | ||||||||||| |||||| | || ||| |||| ||||||||||| |||||||| || Sbjct 1382 ATATCGTCGGGTCTTTTTTCCGGCTCAGTCATCGCCCAAGCTGGCGCTATCTGGGCATCG 1323 Query 2935 ATGAGGAGGATTCACGGGCATTCTCGCGGGATGTGGAAGCTGCATGGAATGAGTATGCCG 2994 ||||| || | || || || || || || || ||||| |||||||| |||| ||||| Sbjct 1322 GGGAGGAAGAAGCCCGTGCCTTTTCCCGCGAGGTTGAAGCGGCATGGAAAGAGTTTGCCG 1263 Query 2995 AGGACGACTTTTGCGGGATTGATGCCGAGCGTAAGCGAACGTTTACGATGATGATCCGAG 3054 |||| |||| ||| | ||||| | ||||| || || |||||||| |||||||| || | Sbjct 1262 AGGATGACTGCTGCTGCATTGACGTTGAGCGAAAACGCACGTTTACCATGATGATTCGGG 1203 Query 3055 AAGGTGTGGCCATGCACGCGTTTAACGGTGAATTATGCACGCAGGCGACCTGGGACAGCG 3114 ||||||||||||||||||| |||||||||||| | | | ||||| |||||||| | | Sbjct 1202 AAGGTGTGGCCATGCACGCCTTTAACGGTGAACTGTTCGTTCAGGCCACCTGGGATACCA 1143 Query 3115 ATTCAACGCGTCTTTTCCGTACTCAGTTCAAAATGGTCAGTCCGAAGCGCGTCAGCAATC 3174 ||| |||| |||||||| || |||||| |||||||| ||||||||| ||||||| | Sbjct 1142 GTTCGTCGCGGCTTTTCCGGACACAGTTCCGGATGGTCAGCCCGAAGCGCATCAGCAACC 1083 Query 3175 CGAATAATATCGGTGATACCCGGAACTGTCGCGCCGGTGTGAAAATAAATGATAGCGGTG 3234 |||| |||| ||| || | ||||||||| || ||||||||| | || ||||| ||||||| Sbjct 1082 CGAACAATACCGGCGACAGCCGGAACTGCCGTGCCGGTGTGCAGATTAATGACAGCGGTG 1023 Query 3235 CTGCGCTGGGATATTACGTCAGCGACGATGGTTATCCCGGCTGGATGGCGCAGAACTGGA 3294 | ||||||||||||||||||||||| || || ||||| ||||||||| ||||||| |||| Sbjct 1022 CGGCGCTGGGATATTACGTCAGCGAGGACGGGTATCCTGGCTGGATGCCGCAGAAATGGA 963 Query 3295 CCTACATTCCTCGCGAACTACCCGGCGGTCGACCTTCATTTATCCATGTATTCGAACCGA 3354 | | || || || || |||||||||| || | || || || || || || ||||| Sbjct 962 CATGGATACCCCGTGAGTTACCCGGCGGGCGCGCCTCGTTCATTCACGTTTTTGAACCCG 903 Query 3355 TGGAGGATGGACAGACCCGTGGGGCCAATGCGTTTTACAGCGTGATGGAGCAGATGAAAA 3414 ||||||| || ||||| || || || |||| ||||||||||||||||||||||||||| | Sbjct 902 TGGAGGACGGGCAGACTCGCGGTGCAAATGTGTTTTACAGCGTGATGGAGCAGATGAAGA 843 Query 3415 TGCTCGATACCCTGCAAAATACCCAGCTCCAGAGCGCGATAGTGAAGGCTATGTATGCCG 3474 ||||||| || ||||| || || ||||| |||||||| || |||||||| |||||||||| Sbjct 842 TGCTCGACACGCTGCAGAACACGCAGCTGCAGAGCGCCATTGTGAAGGCGATGTATGCCG 783 Query 3475 CTACCATCGAGAGTGAACTGGATACCCAATCGGCGATGGACTTTATTCTCGGCGCGGATA 3534 | ||||| |||||||| |||||||| || || |||||||| |||||||| |||||| | | Sbjct 782 CCACCATTGAGAGTGAGCTGGATACGCAGTCAGCGATGGATTTTATTCTGGGCGCGAACA 723 Query 3535 ATAAAGAGCAGCAGAGCAAACTTACGGGCTGGCTCGGTGAAATGGCGTCCTATTACTCAG 3594 | | ||||||| | | || || |||||| | |||||||| || | |||||| | | Sbjct 722 GTCAGGAGCAGCGGGAAAGGCTGACCGGCTGGATTGGTGAAATTGCCGCGTATTACGCCG 663 Query 3595 CTGCGCCTGTTCGCCTGGGTGGGGCAAGGGTTCCACACCTGTTGCCGGGTGATTCTCTCA 3654 | ||||| || || ||||| || |||| || || |||||| |||||||||| || || | Sbjct 662 CAGCGCCGGTCCGGCTGGGAGGCGCAAAAGTACCGCACCTGATGCCGGGTGACTCACTGA 603 Query 3655 ACCTTCAGTCGGCGCAGGATACCGATAACGGCTACTCGACTTTTGAACAGTCCCTGCTGC 3714 |||| ||| |||| |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 602 ACCTGCAGACGGCTCAGGATACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTGC 543 Query 3715 GTTATATTGCCGCTGGGCTTGGTGTGTCGTATGAGCAGCTTTCGCGAAACTATTCGCAGA 3774 | ||||| || || ||||| ||||| ||||||||||||||||| || || || | |||| Sbjct 542 GGTATATCGCTGCCGGGCTGGGTGTCTCGTATGAGCAGCTTTCCCGGAATTACGCCCAGA 483 Query 3775 TGAGCTACTCGACCGCACGCGCAAGTGCTAACGAGTCCTGGGCGTACTTTATGGGGCGTC 3834 |||||||||| || ||||| || ||||| |||||||| |||||||||||||||||||| | Sbjct 482 TGAGCTACTCCACGGCACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGGC 423 Query 3835 GCAAGTTTGTGGCATCCCGACAGGCCTGTCAGATGTTTCTTTGCTGGCTTGAAGAGGCGA 3894 | || || || |||||||| ||||| | ||||||||||| |||||||| |||||||| | Sbjct 422 GAAAATTCGTCGCATCCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCCA 363 Query 3895 TTGTCCGCCGCGTGGTCACGCTTCCTTCGAAAGCCCGGTTCAGTTTCCAGGAGGCGAGAA 3954 | || ||||||||||| ||| | ||||| ||||| || |||||||| ||||| || | | Sbjct 362 TCGTTCGCCGCGTGGTGACGTTACCTTCAAAAGCGCGCTTCAGTTTTCAGGAAGCCCGCA 303 Query 3955 CAGCCTGGGGGAATGCCAACTGGATTGGCTCTGGTCGAATGGCAATTGACGGGCTGAAAG 4014 ||||||||||| | ||||||| ||||| ||||| ||||| || || || ||||||| Sbjct 302 GTGCCTGGGGGAACTGCGACTGGATAGGCTCCGGTCGTATGGCCATCGATGGTCTGAAAG 243 Query 4015 AGGTACAGGAGGCCGTCATGCTCATTGAGGCAGGTCTCAGCACGTATGAAAAAGAGTGCG 4074 | || ||||| || || ||||| || || || || || || || || || |||||||||| Sbjct 242 AAGTTCAGGAAGCGGTGATGCTGATAGAAGCCGGACTGAGTACCTACGAGAAAGAGTGCG 183 Query 4075 CCAAACGCGGTGATGATTATCAGGAGATTTTTGCCCAGCAGGTCCGGGAAACCATGGAGC 4134 | ||||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 182 CAAAACGCGGTGACGACTATCAGGAAATTTTTGCCCAGCAGGTCCGTGAAACGATGGAGC 123 Query 4135 GTCGTGCTGCGGGTCTGAAACCACCGGCATGGGCCGCTGCAGCTTTTGAGGCCGGAGTGA 4194 | ||||| || ||||| ||||| || || ||||| |||||||| ||||| |||| || Sbjct 122 GCCGTGCAGCCGGTCTTAAACCGCCCGCCTGGGCGGCTGCAGCATTTGAATCCGGGCTGC 63 Query 4195 AAAAATCAAACGAGGAGGAGCAAGA-TGGC-GCACGAGCTGCGTAATCTTCCGCATATTG 4252 | |||||| ||||||||| |||| || | ||| ||||||||| |||| ||||||| || Sbjct 62 GACAATCAACAGAGGAGGAG-AAGAGTGACAGCA-GAGCTGCGT-ATCTCCCGCATA-TG 7 Query 4253 CCAG 4256 |||| Sbjct 6 CCAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141803486786016