Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq32376 100 2e-16 seq41040 91.5 1e-13 seq39663 91.5 1e-13 seq14423 91.5 1e-13 seq14855 86.0 5e-12 seq40108 82.4 6e-11 >seq32376 Length=6472 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| ||| || ||| | ||| Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||||||||| | || ||||||| Sbjct 707 GATACCATTGACAATGTGAAGACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCAA 648 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || |||||| | |||||| | || |||| ||||| ||| Sbjct 647 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAAC 588 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || ||||| || || |||| | |||| |||| || || Sbjct 587 ATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGGCAT 538 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || ||||| || |||| |||| Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||| | || || || ||||| | || |||||| Sbjct 251 GATACTATTGATAATGTGAAAGCAAAGATTCAG-GATAAGGAGGGCATCCCGCCAGATCA 193 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || | |||||| || |||| | || |||||||| Sbjct 192 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAA 133 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||| || || |||||| |||| |||| || Sbjct 132 CATTCAGAAGGAGTCTACTTTGCATTTGGTCTT 100 >seq41040 Length=490441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || || ||| || ||| ||| Sbjct 178972 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 178913 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||| ||||| | ||| |||||| Sbjct 178912 GACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAG 178853 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||| || |||||||||||| | || ||| |||| |||| ||||||||| Sbjct 178852 CAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAAC 178793 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || ||||| ||| | || || || | || || || || Sbjct 178792 ATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTAT 178743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| || ||| || Sbjct 167981 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 167922 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||||||||| | || ||| ||| Sbjct 167921 GACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAA 167862 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || ||||| | |||||| | ||| ||||||| || ||| Sbjct 167861 CAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAAC 167802 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| ||||| || || || ||| |||| Sbjct 167801 ATTCGGAAAGAGTCCACCCTACACTTGGT 167773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || ||| |||||||| || |||||||| || ||||| | ||| Sbjct 179107 GACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAA 179048 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| | ||| ||||||| || |||||||| ||||| || || || ||| |||| Sbjct 179047 GATGGCAGAACCTTGGCCGACTACAACATTCAGAAAGAGTCCACCCTACACTTGGT 178992 >seq39663 Length=443811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| ||||||||||| || ||| ||| |||| | ||| Sbjct 345484 ATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCA 345425 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | || |||||| Sbjct 345424 GACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAG 345365 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || || ||||| || |||||| | || ||| | || | |||||||| ||| Sbjct 345364 CAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAAC 345305 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || || || || || |||| | |||| |||| || || Sbjct 345304 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGGTAT 345255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || |||||||| || |||| || Sbjct 344800 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTGGAAAGCTCC 344741 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || ||||||||||| | || ||| || Sbjct 344740 GATACAATTGACAATGTTAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 344681 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| |||| || ||||| ||||| || ||||| ||| | |||| |||| |||||||| Sbjct 344680 CAGCGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGAACTTTGGCAGATTATAAT 344621 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || || || || || ||||| Sbjct 344620 ATCCAGAAGGAGTCCACCCTGCA 344598 >seq14423 Length=23748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || || ||||||||| || || ||| Sbjct 12322 ATGCAGATTTTTGTGAAGACTTTAACTGGGAAGACCATTACCTTGGAGGTTGAGAGTTCT 12381 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | || || || Sbjct 12382 GATACCATTGATAATGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 12441 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || ||||||||| || | || |||||||| Sbjct 12442 CAGAGGCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGGACCCTTGCTGATTATAAT 12501 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||| ||||||||| |||| || || | || || || || Sbjct 12502 ATCCAGAAGGAATCCACTCTGCACTTGGTTTTGCGACTTCGCGGTGGAAT 12551 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || || || ||||||||| || |||| |||| Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || |||||| ||||| || || | || ||||| Sbjct 11470 GATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATCAG 11529 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || || |||||||| ||| | || | || ||||| ||| Sbjct 11530 CAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAAC 11589 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || ||||| || ||| Sbjct 11590 ATTCAAAAGGAGTCTACCCTTCAC 11613 >seq14855 Length=14869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 12551 ATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCT 12492 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || || || || || | || ||||| Sbjct 12491 GATACAATTGACAATGTGAAAGCTAAGATTCAG-GATAAGGAAGGTATCCCTCCGGATCA 12433 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||||||||||| || || || ||||||||| | ||| | | |||||||| Sbjct 12432 GCAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACCCTTTCAGATTATAA 12373 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || || ||||| |||||| |||| || | | || || ||||| Sbjct 12372 CATCCAGAAGGAGTCTACACTGCACTTGGTTTTGCGGCTTCGTGGTGGGAT 12322 >seq40108 Length=192235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| ||| ||| ||| | ||| Sbjct 160319 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTCGAATCCTCA 160378 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || || || Sbjct 160379 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATACCACCCGACCAG 160438 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || |||||| | || ||| | || |||| ||||| ||| Sbjct 160439 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGGAGGACCTTGGCTGATTACAAC 160498 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || || || || || |||| | |||| |||| || || Sbjct 160499 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTTCGATTGAGAGGCGGCAT 160548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425174271011856