Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq32376 125 1e-23 seq14423 125 1e-23 seq14855 109 1e-18 seq40108 107 3e-18 seq39663 95.1 2e-14 >seq32376 Length=6472 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||||||| || |||| ||| | |||| ||| || || || Sbjct 531 AATTTGCATGCCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTT 590 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || || ||| || | |||||| || |||||||| | |||||||| Sbjct 591 GTAATCAGCCAAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTG 650 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| || || ||||| || || | ||| ||| ||||| || Sbjct 651 ATCTGGAGGGATACCCTCTTTGTCCTGAATTTTCGTCTTCACATTGTCAATGGTATCTGA 710 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || | || || ||||| || ||||| Sbjct 711 GGATTCGACCTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 767 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||| || || ||||| || | |||||| ||||| || || || ||||| || Sbjct 840 ATCCTCTAATTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTT 899 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | || ||| ||||| ||| ||| || || | || || Sbjct 900 GTCTTGGATCTTAGCTTTCACGTTGTCAATGGTATCCGAACTCTCCACCTCCAAGGTGAT 959 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||||| ||||| ||||| || ||||| Sbjct 960 GGTCTTACCTGTTAGAGTTTTCACAAAGATCTGCAT 995 >seq14423 Length=23748 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||||||| |||| ||| | || | ||| || || || Sbjct 11874 AATTTGCATGCCACCTCTCAATCGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATGTT 11815 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || || ||| || | |||||| || |||||||| || ||||| || Sbjct 11814 GTAATCAGCTAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAAAATCAACCTCTGCTG 11755 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || |||||||| || || || | || | ||| ||| || || || Sbjct 11754 ATCTGGAGGGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGA 11695 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || ||||| || || | || || ||||| || ||||| Sbjct 11694 GGACTCAACCTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTAACAAAGATCTGCAT 11638 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||||||| |||| || | || | ||| || ||||| Sbjct 12102 AATTTGCATGCCACCTCTCAATCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATT 12043 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || || ||| || | ||||| ||||||||||| | ||||| || Sbjct 12042 GTAATCAGCTAGGGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTG 11983 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || |||||||| || || || | || | ||| ||| || || || Sbjct 11982 GTCTGGAGGGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGA 11923 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || ||||| ||||| | || || ||||| |||||||| Sbjct 11922 GGATTCAACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAAATTTGCAT 11866 >seq14855 Length=14869 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||||||| |||| ||| | |||| || || || || || || Sbjct 13006 ATACCACCTCTCAATCGAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCA 13065 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || || || ||||| ||| Sbjct 13066 GCAAGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTTTGCTGATCCGGA 13125 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| || || | || | ||| ||||| || || || ||| Sbjct 13126 GGAATACCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCGATAGTGTCTGAGGATTCA 13185 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| | || || ||||| || ||||| Sbjct 13186 ACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 13235 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || |||| |||| |||| ||| || || |||||||| Sbjct 12778 ATGCCACCTCTCAATCGCAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTATAGTCA 12837 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | |||||| || || || || | ||||| || || ||| Sbjct 12838 GCAAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGA 12897 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | |||| ||| ||| || || ||| ||| Sbjct 12898 GGGATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTATCAATGGTGTCTGAACTCTCC 12957 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||||| || || ||||| || | || ||||| || ||||| Sbjct 12958 ACTTCCAATGTTATGGTCTTCCCTGTCAGGGCCTTAACAAAAATCTGCAT 13007 >seq40108 Length=192235 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||||||||||||| |||| ||| | || | ||| || || || Sbjct 160555 AATTTGCATGCCGCCTCTCAATCGAAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTT 160496 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || || ||| || | |||||| || |||||||| | ||||| || Sbjct 160495 GTAATCAGCCAAGGTCCTCCCATCCTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTG 160436 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || ||||| || ||||| || || || |||| || | ||| ||| || || || Sbjct 160435 GTCGGGTGGTATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCTGA 160376 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| ||||| | || || ||||| || ||||| Sbjct 160375 GGATTCGACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 160319 >seq39663 Length=443811 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| || |||| ||| | || | ||| || || || || ||| Sbjct 345255 ATACCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCG 345314 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | |||||| || |||||||| | || || ||||| || Sbjct 345315 GCGAGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGT 345374 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || || || | || | ||| ||| || || || || || Sbjct 345375 GGGATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATGGTGTCTGAGGATTCC 345434 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || | || || ||||| || ||||| Sbjct 345435 ACCTCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCAT 345484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899154372084480