Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14855 104 3e-17 seq41040 100 4e-16 seq39663 98.7 1e-15 seq7383 95.1 2e-14 seq43196 86.0 9e-12 >seq14855 Length=14869 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || |||||||| || || || || || | || || || |||| Sbjct 12551 ATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCT 12492 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || ||||| ||||| || ||||| || || Sbjct 12491 GATACAATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAG 12432 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||| | |||||| ||||| | ||||||||||| Sbjct 12431 CAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACCCTTTCAGATTATAAC 12372 Query 156003 AT 156004 || Sbjct 12371 AT 12370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || || ||||| ||||| || || ||| ||| Sbjct 12323 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACTATCACATTGGAGGTGGAAAGCTCT 12264 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| || || || || |||||||| || Sbjct 12263 GATACAATTGACAATGTTAAGGCGAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 12204 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||||| ||| || |||||| | || ||| | ||| | | ||||||||| Sbjct 12203 CAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGATTATAAT 12144 Query 156003 AT 156004 || Sbjct 12143 AT 12142 >seq41040 Length=490441 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||| || || || | || || || |||| Sbjct 178516 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 178457 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| |||||| ||||| ||||||||||| || ||||| ||| Sbjct 178456 GACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 178397 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || ||||| || ||| ||||||||| | ||||| || Sbjct 178396 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAAC 178337 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 178336 ATTCAGAAAGAGTCCACCCTCCA 178314 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||| || || || | || || || |||| Sbjct 167298 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 167239 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| |||||| ||||| ||||||||||| || ||||| ||| Sbjct 167238 GACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 167179 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || ||||| || ||| ||||||||| | ||||| || Sbjct 167178 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAAC 167119 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 167118 ATTCAGAAAGAGTCCACCCTCCA 167096 >seq39663 Length=443811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || || || |||||||| || || ||| || Sbjct 344800 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTGGAAAGCTCC 344741 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||| || || |||||||| || Sbjct 344740 GATACAATTGACAATGTTAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 344681 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || |||||| | || ||| ||||||| ||||||||||| Sbjct 344680 CAGCGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGAACTTTGGCAGATTATAAT 344621 Query 156003 AT 156004 || Sbjct 344620 AT 344619 >seq7383 Length=6982 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975 || || |||||||| ||||| || || ||||| ||||||| ||||||||||||||| ||| Sbjct 806 GACAAGGAAGGCATCCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGTAAGCAGCTGGAA 865 Query 155976 GATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| | | ||| | | |||||||| ||| || || |||| |||||||| || || Sbjct 866 GATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCGACTCTTCATTTGGTCTTG 925 Query 156036 AG 156037 || Sbjct 926 AG 927 >seq43196 Length=72091 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || || || || | || || || ||| Sbjct 32520 ATGCAGATTTTCGTGAAGACTTTGACTGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 32461 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||| || || ||||| || || || || || || || Sbjct 32460 GACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCAG 32401 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| |||||||||||||| ||| || ||| | | ||||| || Sbjct 32400 CAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGAAGGACTCTTGCGGATTACAAC 32341 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || |||||| | ||| Sbjct 32340 ATCCAGAAGGAGTCCACCCTTCATCTTGTG 32311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731465225542400