Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq42083 113 1e-19 seq40615 111 5e-19 seq44058 104 7e-17 seq40957 104 7e-17 seq43683 86.0 2e-11 >seq42083 Length=66024 Score = 113 bits (124), Expect = 1e-19 Identities = 161/223 (72%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| ||||| |||||||| | |||||| || | | Sbjct 46269 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCA 46210 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC--CAGAT-G 156162 |||| |||| || |||||||||||| ||||| ||||||||||| | ||| | || | Sbjct 46209 GCATGGGAACAACACCATTGGAAGTCCCATTAGTTCCGCGAATGT---AACTGCCCATGG 46153 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | | ||||| || |||| | |||| ||| ||| || | Sbjct 46152 CACGAATGTTGTGAACAGAAACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACT 46093 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| |||| || || ||| |||||||| ||| Sbjct 46092 CCTTCAAAGTATCATAAATCCCCTCTATACTATCATCTTTCAT 46050 >seq40615 Length=78322 Score = 111 bits (122), Expect = 5e-19 Identities = 316/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT-TGCTT-- 288938 |||||||||||| | ||| |||||| |||||| ||||||| | | | | || || Sbjct 60025 GTCTAATATATCAGGTCTATTTGTTCCTGCCAGCACAACAAC---TCCAGCTGTGGTTCC 60081 Query 288939 AAATCCATCCATACTTGTTAAA-ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||| |||||||| || | || | |||||| | || ||| | |||||||||| Sbjct 60082 AAAACCATCCAT-CTCGACCAACAATTGATTTAAAGTACTTTCGCGCTCATCATTTG--- 60137 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| || ||| | | |||| | ||||| |||||||| || ||||| || | Sbjct 60138 CTCCAGAGAAACCTCCACGTCCCCTTGCTCGACCAATCGCATCAATCTCATCAATAAATA 60197 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCC 289115 | | || |||| | ||||| || || | ||| || | ||| || | |||| || Sbjct 60198 TTATACTGGGAGCACACTGTCTTGC--TTCCTGAAACAAGTTTCTCACCCTAGATGGCCC 60255 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAA-TGTTACATTTG 289174 | ||||||| ||||||| | || |||||| | |||| | ||| ||| || |||| | Sbjct 60256 GACACCAACAAACATTTCCATGAAATCAGAACCAGATA-TAGAAAGAAATGGTACAGCAG 60314 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 || ||||| ||| | || | ||| || || ||||| || || || || | | | Sbjct 60315 ACTCTCCTGCAGTTGCTTTTGCTAAAAGGGTTTTTCCTGTGCCTGGAGGACCAACCAGGA 60374 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATATTTCTCAGGGCTCTTTAAAAA 289292 || | || ||||| | ||| || ||| || ||| |||||| | ||| |||| | || Sbjct 60375 GAGCACCTTTTGGAATTTTCGCACCA--AGTTCTTCATATTTTTTTGGGTTCTTAAGGAA 60432 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| ||| || ||| | |||||||||||||| || || ||||| Sbjct 60433 GTGGACAAACTCCATAATTTCTTGCTTTGCCTCATCACAGCCAGCAACATC 60483 Score = 91.5 bits (100), Expect = 4e-13 Identities = 215/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| || || | || |||| | || || || || | Sbjct 44796 ACCAATTGCATCAATCTCATCAATAAATATTATACTGGGAGCACACTGCCTTGC--TTCC 44853 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || | ||| || | ||||| || | ||||||| | ||||| || |||||| Sbjct 44854 TGAAACAAGTTTCTCACCCTAGATGCCCCGACACCAACAAAAATTTCCGTGAAATCAGAA 44913 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| ||| |||| |||| | || ||||| ||| | || | ||| || Sbjct 44914 CCAGATATAGGAAAAAATGGTACAGCAGACTCTCCTGCAGTTGCTTTTGCTAAAAGGGTT 44973 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA- 289265 || ||||| || || || || | | ||| | || ||||| | |||||| ||| || Sbjct 44974 TTTCCTGTGCCTGGAGGACCGACCAGAAGAGCACCTTTTGGAATTTTTGCACCA--AGTT 45031 Query 289266 CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 ||| |||||| | ||| |||| | || | |||| ||| || ||| | ||||||| Sbjct 45032 CTTCATATTTTTTTGGGTTCTTGAGGAAGTGGACAAACTCCATAATTTCTTGCTTTGCCT 45091 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || || ||||| Sbjct 45092 CATCACACCCCGCAACATC 45110 >seq44058 Length=119181 Score = 104 bits (114), Expect = 7e-17 Identities = 279/422 (66%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| || ||||| ||| | || ||| || || || ||||| |||||||||||| Sbjct 58868 CTCAAACCCGTCCATTTCTGTCAGAAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTT-- 58811 Query 288996 ACCTCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051 |||| || | || || ||| ||| | ||||||||||||||||| |||| Sbjct 58810 -CCTCCG-------CCAATTCCAGCACCTCTTTGCCTTCCAACAGCATCAATTTCATCAA 58759 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 |||| | || |||| ||| | | | || | ||||| || | || || || | Sbjct 58758 CAAAAACAATGCAGGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGAGAAG 58699 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACA 289170 | |||| ||||||| |||| || ||||| |||||| | || | |||| | |||| ||| Sbjct 58698 CACCAATACCAACAAACATCTCAACAAACTCAGAACCTGAGA-TTGAGAAAAATGGGACA 58640 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 |||||| || || | ||| | || | || ||||| || || || || || || Sbjct 58639 CCTGCTTCACCAGCAATAGCCTTGGCTAATAGCGTCTTCCCAGTCCCTGGAGGACCAATA 58580 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 | |||||||| ||||||| || ||| ||| | | ||||||| |||| | | Sbjct 58579 AGAAGAACTCCTTTTGGTATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGA 58520 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 || || || | ||| || || | || || ||||| || || |||||| |||| Sbjct 58519 AACTCCACCACCTCCATAAAATCCTGCTTGGCTTCATCTACCCCGGCAACATCATCAAAT 58460 Query 289351 GT 289352 || Sbjct 58459 GT 58458 >seq40957 Length=105852 Score = 104 bits (114), Expect = 7e-17 Identities = 333/511 (65%), Gaps = 22/511 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||||| |||| | ||| || | ||| | || || || ||||| ||||| Sbjct 5510 CTATCAAACCGGCCAGGTCTCAGTAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCA 5451 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | |||| ||| |||| | || ||| |||||||| ||| |||| ||| Sbjct 5450 GCAACGACAATGATAC---CGGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGG 5394 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC----CGAATCGCTCCt 289022 || || || ||||| ||||||||||| |||| |||| | | || || || Sbjct 5393 TTGAGGGTCTGTTCTCTTTCATCATT---CCCTC------CACCAATTCCAGTCCCT-CT 5344 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || | | ||||||||||||||||| |||| || | | || || | ||| | | | || Sbjct 5343 TTGTCTCCCAACAGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC 5284 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | || || || | || || || || |||| ||||||| |||| || ||||| || Sbjct 5283 CTTCTTGAACAAATCACGGACTCGAGAAGCGCCAACACCAACAAACATCTCAACAAACTC 5224 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 |||| | |||| |||| | || | || ||||| || || | ||| | || | | Sbjct 5223 AGAACCAGATA-TTGAGAAAAACGGAACTCCGGCTTCACCGGCAATAGCCTTGGCTAACA 5165 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 ||||| || ||||| || || || | |||||||| || |||| || || Sbjct 5164 AGGTCTTCCCAGTTCCGGGAGGACCAATAAGAAGAACTCCTTTAGGTATGCGAGCTCCGA 5105 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 ||| || | ||||||| |||| | ||| || || | |||| || || | || | Sbjct 5104 CAGCAGTAAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATAAAATCCTGCTTGG 5045 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || || |||||| |||| || Sbjct 5044 CTTCATCCACCCCGGCAACATCATCAAATGT 5014 >seq43683 Length=12507 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||| | |||||||||||||| || || | |||||||||| |||||||||||| Sbjct 10091 TTGCAAAGAGATCTCTTACACGGGAGGCACCCATGCCAACATACAACTCTACAAATTCAC 10032 Query 289145 AAGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| || |||| || || | |||| ||||| || || || ||| | || || || Sbjct 10031 TAGCAGAACAACTT--ATAAAAGGCACATCAGCTTCCCCAGCCACAGCCTTTGCTAGTAG 9974 Query 289203 TGTCTTACCTGTTCCAGG 289220 || |||||||| ||||| Sbjct 9973 AGTTTTACCTGTCCCAGG 9956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470979112872368