Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq41040 104 2e-17 seq32376 102 7e-17 seq14855 102 7e-17 seq14423 98.7 8e-16 seq39663 84.2 2e-11 >seq41040 Length=490441 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || || || ||||| ||| | || |||| | Sbjct 178516 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 178457 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || || ||| |||||||||||| | || || ||| Sbjct 178456 GACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 178397 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || |||||||| ||||||| |||||| |||| ||||||||| Sbjct 178396 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAAC 178337 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| || || Sbjct 178336 ATTCAGAAAGAGTCCAC 178320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || || || || || ||| | || |||| | Sbjct 167298 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 167239 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || || ||| |||||||||||| | || || ||| Sbjct 167238 GACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 167179 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || |||||||| ||||||| |||||| |||| ||||||||| Sbjct 167178 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAAC 167119 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| || || Sbjct 167118 ATTCAGAAAGAGTCCAC 167102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 |||||| || ||||| || || || || || || ||||| ||| | || |||| | Sbjct 179429 AATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 179370 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | | || || |||||| |||||||| ||| | || || Sbjct 179369 TGAC---ACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGA 179313 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || || || || || | || || |||||||| ||||||| ||||||| |||| ||||| Sbjct 179312 CCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAACATTGGCTGATTA 179253 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| ||||| || || | ||| | ||||| |||| || || || Sbjct 179252 CAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGG 179202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| ||| | || || ||||| || || || | ||| ||||||||||| || Sbjct 179107 GACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAA 179048 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| |||||| |||| || ||||||||||| ||||| || || | ||| ||||| Sbjct 179047 GATGGCAGAACCTTGGCCGACTACAACATTCAGAAAGAGTCCACCCTACACTTGGTG 178991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| ||||| || || | || || || ||||| ||| | || |||| || Sbjct 167981 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 167922 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || || ||| |||||||| ||| | || || Sbjct 167921 GAC---ACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGAC 167865 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || || | ||| ||||||||||| || |||| |||||| |||| || ||| Sbjct 167864 CAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTAC 167805 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| ||||| || || | ||| ||||| Sbjct 167804 AACATTCGGAAAGAGTCCACCCTACACTTGGTG 167772 >seq32376 Length=6472 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || |||||||| ||||| || || |||||||| ||| | || || | ||| | Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||| ||| |||||||| || | || ||||| Sbjct 707 -GATACCATTGACAATGTGAAGACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCA 649 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || ||||||| ||| || ||||| || || |||| || || |||| |||||||| Sbjct 648 ACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAA 589 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || ||||| | || ||||| | || || |||| || Sbjct 588 CATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGG 541 >seq14855 Length=14869 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||| || || || || |||||||| ||| |||| || ||| | Sbjct 13235 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCA 13176 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | || || |||||| |||||||| || | || |||||| Sbjct 13175 -GACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCA 13117 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || || ||||||||||||| || || | || |||||||| Sbjct 13116 GCAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTTGCTGATTACAA 13057 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || |||||||| | || ||||| | || || |||| || Sbjct 13056 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 13009 >seq14423 Length=23748 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | |||||||| ||||||||| | || ||| | Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||| || ||||| ||||| | || ||||| Sbjct 11470 GATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATCAG 11529 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| ||||| || ||||||||| | || | || ||||||||| Sbjct 11530 CAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAAC 11589 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| || ||||| Sbjct 11590 ATTCAAAAGGAGTCTAC 11606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| |||||||| || || || || || ||||| || | || |||| || | Sbjct 12094 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGCTCA 12153 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| || || || ||| | || || || Sbjct 12154 -GATACCATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGCATCCCACCAGACCA 12212 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || |||||||| || |||| ||||| | || |||||||| Sbjct 12213 GCAGAGGCTTATATTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTACAA 12272 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||| || || ||||| |||| |||| || Sbjct 12273 CATTCAGAAGGAGTCTACTCTGCATTTGGTCTT 12305 >seq39663 Length=443811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||| || || || || ||||| || ||| |||| ||| ||| | Sbjct 345484 ATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCA 345425 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || |||||| |||||||| ||| | || ||||| Sbjct 345424 -GACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCA 345366 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || |||| ||| |||||||| || ||||||| || || | || |||||||| Sbjct 345365 GCAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAA 345306 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || || || || || Sbjct 345305 CATCCAGAAGGAGTCCAC 345288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412617879072752