Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq41040 98.7 2e-15 seq39663 84.2 3e-11 >seq41040 Length=490441 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| ||||| || |||| || || | | Sbjct 167297 TGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTG 167238 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| ||||||||||||||||| || |||| Sbjct 167237 ACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAAC 167178 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| || ||||| | || ||| ||||| || | ||||| || | Sbjct 167177 AGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACA 167118 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATAT 146268 | || ||||| || || |||| | || | || || || || ||| | ||| ||| Sbjct 167117 TTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAAGTAT 167061 Score = 89.7 bits (98), Expect = 8e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || || || |||| || || | | Sbjct 178515 TGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTG 178456 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || |||||| ||| ||||||||||||||||| || |||| Sbjct 178455 ACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAAC 178396 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| || ||||| | || ||| ||||| || | ||||| || | Sbjct 178395 AGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACA 178336 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATAT 146268 | || ||||| || || |||| | || | || || || || ||| | ||| ||| Sbjct 178335 TTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAAGTAT 178279 >seq39663 Length=443811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| || || ||||| | || || ||| || Sbjct 344799 TGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTGGAAAGCTCCG 344740 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || ||||| || ||||| || || || | Sbjct 344739 ATACAATTGACAATGTTAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAGC 344680 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| |||||||| || || || || || ||| | |||| || |||||||||||| Sbjct 344679 AGCGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGAACTTTGGCAGATTATAATA 344620 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 344619 TCCAGAAGGAGTCCAC 344604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785729448714880