Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq41040 102 8e-17 seq32376 91.5 1e-13 >seq41040 Length=490441 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | | |||||||| ||||||||||||||| || ||| | |||||| Sbjct 178992 ACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTCA 179051 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | | |||| || | |||||| ||||| || ||||| ||||| || | Sbjct 179052 AGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGA 179111 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | || || | ||| || || | || | || || Sbjct 179112 ATTTTGGCCTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAATTGTCTTG 179171 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||||||||||| Sbjct 179172 CCAGTAAGGGTCTTCACAAAAATCTGCAT 179200 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | | |||||||| |||||||||||||| || ||| | |||||| Sbjct 167773 ACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTCA 167832 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | | |||| || | |||||| ||||| || ||||| ||||| || | Sbjct 167833 AGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGA 167892 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | || || | |||||| || | || | || || Sbjct 167893 ATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTT 167952 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||||| ||||| Sbjct 167953 CCAGTGAGGGTCTTCACAAAAATTTGCAT 167981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||||||||| |||||||| || | ||||||| ||| || Sbjct 173560 ACCAAATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 173619 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || ||| | || |||||||| || || || || || ||||| ||||| | Sbjct 173620 AGCTGCTTGCCAGAAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 173679 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | ||||| | ||| ||||| | || | || || Sbjct 173680 ATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTAATGGTCTTG 173739 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | || || ||||| Sbjct 173740 CCAGTAAGGGTCTTGACAAAGATTTGCAT 173768 >seq32376 Length=6472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||||| | | | ||||| || || |||||||| || || ||| | Sbjct 549 CAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCT 608 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| || ||||| || | | | || || | ||||||||||||||| || || || Sbjct 609 TCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGGGATACCCTC 668 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || |||||| |||| | || | ||||| | | || || || | || Sbjct 669 TTTGTCCTGAATTTTCGTCTTCACATTGTCAATGGTATCTGAGGATTCGACCTCAAGGGT 728 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | ||||| ||||||| ||| || | || ||||||||| Sbjct 729 GATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCATG 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476346299495040