Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq39663 109 5e-19 seq32376 105 6e-18 seq14423 100 3e-16 seq40108 98.7 9e-16 seq14855 95.1 1e-14 >seq39663 Length=443811 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| || || ||| | ||||| |||| || ||| || Sbjct 345485 CATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTC 345426 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || || |||||||| || || || ||||| Sbjct 345425 AGACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCA 345366 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || |||| | || ||||||||||| |||| || | || ||||||||| Sbjct 345365 GCAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAA 345306 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || |||||| ||||||| || | |||||||||| || Sbjct 345305 CATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGG 345258 >seq32376 Length=6472 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || ||| | ||||| | || |||||| || Sbjct 768 CATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTC 709 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || |||||| || ||||||||||| || || ||||| Sbjct 708 AGATACCATTGACAATGTGAAGACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCA 649 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || || || |||| | || |||||||| ||||||| || | | |||||||| Sbjct 648 ACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAA 589 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || || ||| ||||||| ||| | |||||||||| || Sbjct 588 CATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGG 541 >seq14423 Length=23748 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || || || || ||| | ||||| |||| || ||| || Sbjct 11865 CATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTC 11924 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || ||||||||||| || || || || || Sbjct 11925 GGACACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCA 11984 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || |||| | ||| ||||| || || |||| || | | ||| ||||||| Sbjct 11985 GCAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGACCCT-AGCTGATTACA 12043 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || || || |||||| |||| || ||| | |||||||||| || Sbjct 12044 ATATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 12092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || ||| | ||||| | || || || || Sbjct 11637 CATGCAGATCTTTGTTAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTTGAGTCCTC 11696 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || ||||||||||| || || || ||||| Sbjct 11697 GGACACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGATCA 11756 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || | |||| | || |||||||| || |||| || | | ||| ||||||| Sbjct 11757 GCAGAGGTTGATTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCCT-AGCTGATTACA 11815 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || || || || |||||| ||||||| ||| | |||||||||| || Sbjct 11816 ACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 11864 >seq40108 Length=192235 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || ||| | ||||| |||| |||||| || Sbjct 160319 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTCGAATCCTCA 160378 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || |||||||||||||| ||||| ||| Sbjct 160379 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATACCACCCGACCAG 160438 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | || |||||||| || |||| || | | |||||||| Sbjct 160439 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGGAGGACCTTGGCTGATTACAAC 160498 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || |||||| ||||||| || | |||||||||| || Sbjct 160499 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTTCGATTGAGAGGCGG 160545 >seq14855 Length=14869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || ||| | ||||| |||| || ||| || Sbjct 13235 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCA 13176 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || || || || ||||||||||| || || |||||| Sbjct 13175 GACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCAG 13116 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | || || || || || |||| || | | |||||||| Sbjct 13115 CAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTTGCTGATTACAAC 13056 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| ||| ||||||| ||| | |||||||||| || Sbjct 13055 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 13009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444847016532480