Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq32376 104 2e-17 seq41040 89.7 4e-13 seq14423 87.8 1e-12 seq40108 86.0 5e-12 >seq32376 Length=6472 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || |||||||| || ||||| ||| | || ||| || Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | ||||| |||||| |||||||| || | || |||||| Sbjct 707 GATACCATTGACAATGTGAAGACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCAA 648 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| || |||||| | |||||| | || ||| ||||||||| Sbjct 647 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAAC 588 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || ||||| || ||||| || || | || |||| || Sbjct 587 ATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGG 541 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || ||||| || || |||| ||| | Sbjct 539 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCA 480 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| || ||| ||||| || ||| | || ||||| Sbjct 479 GATACTATTGATAATGTGAAATCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 420 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| || |||||| | |||||| | || ||| ||||||||| Sbjct 419 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAAC 360 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || || || || |||||||| || Sbjct 359 ATCCAGAAGGAGTCCACCCTACATTTGGT 331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || ||||| ||||| |||| ||| Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| ||| ||| || || || ||| | || ||||| Sbjct 251 GATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCGCCAGATCAG 192 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || || || | |||||| || |||| | | ||||| ||| Sbjct 191 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAAC 132 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || ||||| | ||||| || ||| || | || || || Sbjct 131 ATTCAGAAGGAGTCTACTTTGCATTTGGTCTTGCGGCTTCGTGGTGG 85 >seq41040 Length=490441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || | ||||||||||| ||||| |||| ||| | Sbjct 179200 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCA 179141 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | ||||| |||||| |||||||| ||| | || || ||| Sbjct 179140 GACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAA 179081 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| || ||||| | |||||| | ||| ||| ||| |||||| Sbjct 179080 CAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAAC 179021 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||| || || ||||| || || Sbjct 179020 ATTCAGAAAGAGTCCACCCTACACTTGGT 178992 >seq14423 Length=23748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| ||||| | || ||||||||||||||| | || ||| Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || ||| ||||| ||||| ||||| | || |||||| Sbjct 11470 GATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATCAG 11529 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||||||||| | ||| || || ||||| || ||| | || | | ||||||||| Sbjct 11530 CAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAAC 11589 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || ||||| || ||||| || || Sbjct 11590 ATTCAAAAGGAGTCTACCCTTCA 11612 >seq40108 Length=192235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || ||||| || || |||| ||| | Sbjct 160547 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACAATAACGTTGGAGGTGGAAAGCTCA 160606 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| || ||| ||||| || ||| | || || || Sbjct 160607 GATACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 160666 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| || ||||| | |||||| | ||| | | ||||| ||| Sbjct 160667 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTATAAC 160726 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || ||||| || ||||| || ||| || | || ||||| Sbjct 160727 ATTCAGAAGGAGTCTACTCTGCATTTGGTGTTGCGGCTTCGTGGAGG 160773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402111575578112