Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq35886 125 1e-23 seq42083 113 6e-20 >seq35886 Length=22054 Score = 125 bits (138), Expect = 1e-23 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||| ||||| || |||||||||||| ||||||| | || || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | ||| ||||| ||||| || |||||||| | || || | ||||||| Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTGTGAATTCCAACAGCAACCCTCATCAAC 12179 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | || ||||| ||||| ||| | || | Sbjct 12180 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGTACCTTCAAGAGGTAGGATCTCTCAA 12237 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 | ||||| || |||||||| | || |||||| || Sbjct 12238 GGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCT 12274 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || || || | || | |||||| ||||| | || | || ||| || | || || Sbjct 11698 TCCCCCTTGGTCAACATAGCGGGCAGTATTATTGAACACGCGCAACATGGGGACGATTCC 11757 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| || ||| ||| ||||||||| |||| ||||| || || ||| Sbjct 11758 ATTGGATGTCCCATTAGTCCCACCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGA 11817 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || |||| ||| | |||||| ||||| || |||||||| Sbjct 11818 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCCTTCAAAGTCTCATATAT 11877 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||||||| ||||||||| |||| | ||||| || ||| Sbjct 11878 ACCCTCTATACTATCATCTTGCATGCACACTAGAAAGCAACTA 11920 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| |||| ||||| || |||||||| | | | ||||||||||| ||| Sbjct 9748 AAAACTCTACGACTGTAGATATTTGAAGTGTATGGTTCAAAACACTCATTATTTCCAAGA 9807 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 ||||| || ||||||||||||||||| ||||||| Sbjct 9808 ATTTGGCTTGTAGATGCAGTTGGCATAGGGGCCACCA 9844 >seq42083 Length=66024 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | |||||| |||| || ||| Sbjct 46253 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACC 46194 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | ||||| ||||| ||| ||||| || | || ||||| || || ||| Sbjct 46193 ATTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGA 46134 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||||||| ||| || | |||||| ||||| || ||||| || Sbjct 46133 AACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAAT 46074 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 |||||||| ||||||||| ||||| Sbjct 46073 CCCCTCTATACTATCATCTTTCATG 46049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686527016088960