Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq32367 123 2e-23 seq37232 87.8 1e-12 seq41918 82.4 6e-11 >seq32367 Length=12065 Score = 123 bits (136), Expect = 2e-23 Identities = 239/344 (69%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || ||||||||||||||| | || || Sbjct 2739 TTCTACGGATTCCAGATCGCCATTGAGAACATCCACTCGGAAATGTACAGTTTGCTCTTA 2680 Query 44003 GATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || || ||||| || || | || |||||| || | || ||| || ||||| || Sbjct 2679 GAAACCTACATTAAGGACTCCGCG-GAGAAGAGCAGACTCTTCCGTGCAATCGAAACTGT 2621 Query 44062 ACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 ||| ||| | | | ||||| || |||||||| |||||||| | || | ||| ||| Sbjct 2620 TCCTTGCG-TAAGGAAGAAAGCCGAGTGGGCCCTGAAATGGATCCACTCGACAGATACTT 2562 Query 44121 TT---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT-TTCAGGATCG 44176 | | ||||| ||||||||||| || ||||||||| || ||||| | | ||| | Sbjct 2561 TCTTCGCGGAACGGCTTGTCGCGTTCGCGTGTGTGGAAGGAATCTTCTTCTCCGGGAGCT 2502 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | ||| ||||| || ||| | ||||| || || | ||||| ||| | || || || || Sbjct 2501 TCTGC-GCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGGCTAACATTCTCCAAC 2443 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||| | || ||||| || || | || ||||| || || || Sbjct 2442 GAGCTGATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTG 2399 >seq37232 Length=10575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 286/430 (67%), Gaps = 17/430 (4%) Strand=Plus/Plus Query 44150 GTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 |||||||| || ||||| || || | | | || | | || || ||| | |||||||| || Sbjct 7028 GTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGTG-CGATTTTCTGGCTGAAGAAACGCGG 7086 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 | | ||||| ||| | |||||||| || ||||| || ||||| || || | || || Sbjct 7087 TCTCATGCCGGGGCTCACGTTTTCCAACGAGTTGATTTCACGTGACGAGGGGCTTCACTG 7146 Query 44269 CGATTTTGCTTGCTTGTT--ACTTGGATATCT-AGGA-GACGATAAGCCTTCATGTAAGA 44324 ||||||||||| ||||| ||| | | || |||| || | | ||| | | || Sbjct 7147 TGATTTTGCTTGTTTGTTGTACTCG--TTGCTGAGGACGAAGCTTAGCG---AGG--AGC 7199 Query 44325 CAATTACAGATATTGT-TGTAGAGGCAGTAAAGATAGAACAAGAATTTATGA-CAACAGC 44382 | | | ||||| ||| || || || |||| || || ||| || | || || Sbjct 7200 GTGTGAAGGGGATTGTGTGT-GATGCGGTGGAGATTGAGAGGGAGTTTGTGTGCGAC-GC 7257 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | || || | || ||||||| |||||||| || |||||||| | | Sbjct 7258 GCTGCCGTGCCGGTTGGTGGGGATGAATGGGGATTTGATGAGTCAGTATATTGAGTTTGT 7317 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTT 44502 || ||||| || | || || || || | || ||| ||| || || ||||| Sbjct 7318 GGCGGATCGGTTGTTGGGTGAGCTTGGGTGTGGGAAGGTGTATGGTGTGCAGAATCCGTT 7377 Query 44503 TGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGG 44562 ||||| ||||| | ||||||||| | || || || ||||| ||||| || |||||||| Sbjct 7378 TGATTGGATGGAGATGATTTCGTTGCAGGGGAAGACTAACTTCTTTGAGAAGCGCGTTGG 7437 Query 44563 AGAATATCAG 44572 ||| |||||| Sbjct 7438 AGAGTATCAG 7447 >seq41918 Length=7750 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||| | |||||| |||| ||||||||||| | || || ||||||||| ||| Sbjct 3918 CCATTTTCTGGCTTAAGAAAAGAGGATTGATGCCTGGTCTCACATTCTCAAATGAGCTAA 3977 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | | | ||||||||| | || || |||||||||||| Sbjct 3978 TCTCTAGAGATGAAGGCCTTCACTGTGATTTTGCTTGC 4015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397240616606320