Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq41040 95.1 1e-14 seq38321 93.3 4e-14 seq14423 84.2 2e-11 >seq41040 Length=490441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || ||||| ||||| ||||||||| || | | | | ||||| Sbjct 178992 ACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTCA 179051 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | ||||| | |||||| || || || | |||||||| || Sbjct 179052 AGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGA 179111 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| |||| | || | ||||||| | || || || | ||| || | ||| Sbjct 179112 ATTTTGGCCTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAATTGTCTTG 179171 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || |||||||| || |||||| Sbjct 179172 CCAGTAAGGGTCTTCACAAAAATCTGCATA 179201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||| || ||||| || | | | ||| | || || Sbjct 173560 ACCAAATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 173619 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || | ||||||||||||| || ||||| || | || || ||||| Sbjct 173620 AGCTGCTTGCCAGAAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 173679 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || |||| | |||| || |||| |||||||| ||||| || | ||| Sbjct 173680 ATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTAATGGTCTTG 173739 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 173740 CCAGTAAGGGTCTTGACAAAGATTTGCAT 173768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||| || ||||| || | | | ||| | || || Sbjct 179448 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 179507 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||||||||| || ||||| || | || || ||||| Sbjct 179508 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 179567 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || |||| | |||| || |||| |||||||| ||||| || | ||| Sbjct 179568 ATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTTG 179627 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 179628 CCAGTAAGGGTCTTGACAAAGATTTGCAT 179656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || ||||| |||| ||||||||| || | | | | ||||| Sbjct 167773 ACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTCA 167832 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | ||||| | |||||| || || || | |||||||| || Sbjct 167833 AGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGA 167892 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| |||| | || | ||||| | | || || || || || || | || Sbjct 167893 ATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTT 167952 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || |||||||| ||||||||| Sbjct 167953 CCAGTGAGGGTCTTCACAAAAATTTGCATA 167982 >seq38321 Length=259108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || || |||| ||||||| ||||| || || Sbjct 81896 GTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGTGTGCGGCCGTCTTCCAGCTGCTTCCC 81954 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 81955 GGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTT 82014 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || || || || | || ||||| || || Sbjct 82015 GACGTTGTCGATTGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGT 82074 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 82075 TTTCACGAAGATCTGCAT 82092 >seq14423 Length=23748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || | ||| || | ||||| || | || || || || || |||||||| || | Sbjct 12094 TGCCACCTCTCAATCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAG 12035 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | | | | || || |||||||| ||||| |||| || | ||| || || || Sbjct 12034 CT-AGGGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGA 11976 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||||||||| |||||| || | | || | ||||| | || |||| Sbjct 11975 GGGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGGATTCA 11916 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||| || |||| || || ||||| |||||||| Sbjct 11915 ACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAAATTTGCAT 11866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424704125923968