Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq32367 134 2e-26 seq5671 132 6e-26 seq42527 120 4e-22 seq36964 120 4e-22 seq37024 114 2e-20 seq1704 114 2e-20 seq44058 111 2e-19 seq42083 98.7 1e-15 seq32508 86.0 8e-12 seq36378 84.2 3e-11 seq37232 82.4 1e-10 >seq32367 Length=12065 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || ||||| ||| || |||||||| || Sbjct 2413 GTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAATGTTAGCCCCGGCATGAGGCC 2472 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || |||||||| ||||||||||||||| || |||||||| Sbjct 2473 GCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGGAGAAGAAGATTCCTTCCACACA 2532 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||| ||||| | ||| ||||| |||||| | | | | | | |||||||| || Sbjct 2533 CGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCTGTCGAGTGGATCCATTTCAGGGC 2592 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | || |||||| | || || ||||||| ||| || Sbjct 2593 CCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCGATTGC 2634 >seq5671 Length=1874 Score = 132 bits (146), Expect = 6e-26 Identities = 306/448 (68%), Gaps = 20/448 (4%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTG 11557 |||||||| |||||||| | || ||||| | || || ||| |||||||| || ||| Sbjct 1853 TTAGTGGCAGCAATAACTATAACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCAGTG 1797 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCG 11616 || |||||||| | |||||| ||||| |||||||| || | || ||| | || | Sbjct 1796 AGCAATTGATTCAGTGTTTGCTCTCTTTCATCATTCCCTCCACCTAT-ACCTGTACCTCT 1738 Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 ||| | ||||| ||||| |||||||||||||| | | ||| ||| |||||| ||| Sbjct 1737 CTGCCTCCCCACAGCATCTATCTCATCAATGAATATCAAACAAGGTGAATTTTCTTTGGC 1678 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || | ||| | |||||| || || ||||||||||||||||| | || | Sbjct 1677 CTTGTTGAACAAATCCCTCACCCTTGAAGCCCCTACACCAACAAACATCTCAATGAACTC 1618 Query 11737 TGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 || |||| || | | |||||| || || ||| || || || || ||| || | Sbjct 1617 TGACCCAGA-CAGAGAAAAGAATGGAACCCCTGCTTCTCCTGCAATTGCCTTGGCCAGCA 1559 Query 11796 GGGTCTTTCCCGTACC---TGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCAC 11852 |||||||| || || |||| | || ||||| | ||| ||| || ||||| | Sbjct 1558 ATGTCTTTCCAGTCCCTGGTGGCCCAACCAAGAGAA---CTCCTTTGGGAATTTTGGCTC 1502 Query 11853 C-ACTTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATC 11910 | ||| | |||| ||||| | || ||| | || || |||||||||| | || | Sbjct 1501 CAACTGCTGAAAACTTCTCTGGAGT--CTTCAAGAACTCAACAATCTCTTGGAAATCTTG 1444 Query 11911 TTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||||| | |||| || | |||||| Sbjct 1443 CTTGGCTTCATCAACTCCAGCCACATCA 1416 >seq42527 Length=94160 Score = 120 bits (132), Expect = 4e-22 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || || ||||| || || || || || || || ||||||||||| Sbjct 57980 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 57921 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||||| ||| |||| |||||||| ||||||||||||||| || |||||||| Sbjct 57920 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 57861 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || || || ||||||||| | | || || | |||||||| || Sbjct 57860 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 57804 Query 122850 CCATTTCGCCTTCTTCT 122866 ||| | || ||||||| Sbjct 57803 CCACTCGGCTTTCTTCT 57787 >seq36964 Length=242943 Score = 120 bits (132), Expect = 4e-22 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || || ||||| || || || || || || || ||||||||||| Sbjct 59763 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 59704 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||||| ||| |||| |||||||| ||||||||||||||| || |||||||| Sbjct 59703 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 59644 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || || || ||||||||| | | || || | |||||||| || Sbjct 59643 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 59587 Query 122850 CCATTTCGCCTTCTTCT 122866 ||| | || ||||||| Sbjct 59586 CCACTCGGCTTTCTTCT 59570 >seq37024 Length=156878 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || || || || || || || ||||| || || ||||||||||| Sbjct 283 GTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAGACC 224 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || || |||||||| | || |||||||| ||||||||||||||| || ||||| || Sbjct 223 GCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCA 164 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| | || || |||||||| | | ||| || | ||||||||| || Sbjct 163 GGCGAAGGCAACCACCCGCTCCGCGAAGGA---ATCCGATGCGTCGATCCATTTCATCGC 107 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | || |||||| | | || || | |||| || ||| Sbjct 106 CCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGC 65 >seq1704 Length=114806 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || || || || || || || ||||| || || ||||||||||| Sbjct 97632 GTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAGACC 97573 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || || |||||||| | || |||||||| ||||||||||||||| || ||||| || Sbjct 97572 GCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCA 97513 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| | || || |||||||| | | ||| || | ||||||||| || Sbjct 97512 GGCGAAGGCAACCACCCGCTCCGCGAAGGA---ATCCGATGCGTCGATCCATTTCATCGC 97456 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | || |||||| | | || || | |||| || ||| Sbjct 97455 CCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGC 97414 >seq44058 Length=119181 Score = 111 bits (122), Expect = 2e-19 Identities = 215/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || |||| || | || ||||| | | ||||| || ||||| || || || Sbjct 58903 TTAGTTGCTGCAACGACTATGATACCAGTATTACCCTCAAACCCGTCCATTTCTGTCAGA 58844 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620 | ||| || | || |||||||| ||||||||| || | ||||||| | |||| Sbjct 58843 AGTTGGTTCAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCAATTCCAGCACCTCTTTGC 58784 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 | || || |||||||| ||||||| || ||||| || || ||| || ||| | Sbjct 58783 CTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAGGGAGCATTCTCTTTGGCCTTC 58724 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | ||| ||||| | ||||| | ||||||||||||||| ||||| | | Sbjct 58723 TTGAATAAATCACGAACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACTCAGAA 58664 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | ||| | || || ||||||||| || |||||| || || || ||| | || || Sbjct 58663 CCTGAG-ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATAGCCTTGGCTAATAGCGT 58605 Query 11800 CTTTCCCGTACCTGG 11814 ||| || || ||||| Sbjct 58604 CTTCCCAGTCCCTGG 58590 >seq42083 Length=66024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| ||||||||||| || || || | ||| ||| ||||| | ||| Sbjct 45747 CTGAGGCCTAGGTGTTCCAGCATTGAAAAGTGTCGGGGATGCATGAGTGAACCACCGTTG 45688 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || || |||| | |||| |||||||| ||| ||| || || | || Sbjct 45687 AGACATCAAGTGATAAGTCTTAACAGCAGATTCAATGTCATCCTTGTGAATTCCAACAGC 45628 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||| || | |||| | |||| | || || | | || | Sbjct 45627 AACCCTCATCAACATGTGCTGAGGCCTCTCCA-CAACCTGCCCTTGAACCTTCAACAGGT 45569 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||| || |||| ||||||||| || | ||| |||||| Sbjct 45568 ATGACCTCTCAAGCGTCTTGAACCCAAAGTAATCATAGTCAAAGTCCC 45521 >seq32508 Length=19167 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/199 (71%), Gaps = 11/199 (6%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGA-CCT-GGCATGAGA 122727 |||||| |||||||| | | || || || || ||| | | || ||| |||||||| Sbjct 4083 GTGGAGGCCCTCATCACACAAGATGAGCTCGTTAGAGTA--AGTGATCCTCGGCATGAGG 4140 Query 122728 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787 || |||||||| | | | || ||||||||||| || ||||||||||| || |||| Sbjct 4141 CCGCGCTTCTTGAGCTAGTAGATAGCGCAGAAGCTACCAGAGAAGAAGATCCCTTCCATG 4200 Query 122788 CACGCAAACGCAAAAAGGCGTTCGGCGAAGGA--GCGAGACTTTGCATCAAACCATTTCA 122845 ||||||||||| | | || ||| || ||||| ||| ||| | |||||||| Sbjct 4201 CACGCAAACGCGACGAAGCATTCTGCAAAGGAATCGGAGGAGTTG-----ATCCATTTCA 4255 Query 122846 TTGCCCATTTCGCCTTCTT 122864 ||||| | |||||||| Sbjct 4256 GCGCCCACTCTGCCTTCTT 4274 >seq36378 Length=63125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/286 (67%), Gaps = 20/286 (7%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | || |||||||| || || ||||||||||| Sbjct 47858 AAAGCCATCCATCTCTGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCATCATT------ 47805 Query 11599 CATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 | |||||| ||| | | | ||| | || || |||||||||||||||||||| || Sbjct 47804 CCCACCACCGAGCCCCGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACAC 47745 Query 11653 AATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCAC 11708 ||| || || || |||| || | ||||| | ||| | ||||| |||| Sbjct 47744 AATGCACGGTGCCTTCGATTTC----GCCTTCTCAAACAAATCCCTCACCCTGGACGCAC 47689 Query 11709 CCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTG 11768 | || || ||||| | |||||| || | | || | |||| || ||| || | Sbjct 47688 CAACCCCCACAAAGAGCTCCACGAACTCAGAAGCCGCGCACGAGAAGAACGGCGTGCCGG 47629 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||||| || | |||| || || |||||||| || || || || Sbjct 47628 CTTCACCAGCCACCGCTCTCGCCAGAAGGGTCTTCCCTGTTCCCGG 47583 >seq37232 Length=10575 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || || ||||| | || || || || || || Sbjct 7155 GCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAAACGTGAGCCCC 7096 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| || ||||||| ||| |||| || ||||| ||||||||||||||| Sbjct 7095 GGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGGAGAAGAAGATC 7036 Query 122779 CCCTCCAC 122786 || ||||| Sbjct 7035 CCTTCCAC 7028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627682939814400