Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42527 140 4e-28 seq36964 140 4e-28 seq37024 134 2e-26 seq1704 134 2e-26 seq32367 123 3e-23 seq37232 96.9 4e-15 seq32508 96.9 4e-15 seq40957 89.7 6e-13 seq44058 86.0 8e-12 >seq42527 Length=94160 Score = 140 bits (154), Expect = 4e-28 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 57980 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 57921 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||||| ||||||||| || || || || |||||||||||||| |||||||| Sbjct 57920 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 57861 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | ||||||||| || |||||| || | | || | ||| |||| ||| Sbjct 57860 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 57804 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||||| || || |||| || || |||| ||| Sbjct 57803 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 57771 >seq36964 Length=242943 Score = 140 bits (154), Expect = 4e-28 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 59763 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 59704 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||||| ||||||||| || || || || |||||||||||||| |||||||| Sbjct 59703 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 59644 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | ||||||||| || |||||| || | | || | ||| |||| ||| Sbjct 59643 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 59587 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||||| || || |||| || || |||| ||| Sbjct 59586 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 59554 >seq37024 Length=156878 Score = 134 bits (148), Expect = 2e-26 Identities = 355/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| |||||||| |||||||| || ||||| | ||| || |||||| Sbjct 582 TACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTTCAACGAAATCAACTCCATC 523 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-TTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||| |||||| || | | || | ||| |||| || | || | Sbjct 522 CAAGGAAACGGGTTCACCACATTATACACTTTCCCACAC-CCAAGCTTCTCAAGCCAATA 464 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||||| || ||||||| |||| | ||||| || ||||| || | | ||| Sbjct 463 ATCCGCAACAAACTCAATATACTGACTCATCTGATCCCCATTCATCCCCAACAACGCACA 404 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| | | ||| || ||||||| ||||| || || ||||| || | | Sbjct 403 CGGCAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCATCACGCACAATCCCCTT 344 Query 129967 AATGGTCTCCGTGCCAGG--TCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGCAAACTC 130023 | | |||| || | | ||| | | || || | || | |||| ||| || Sbjct 343 CACGCGCTCCTCGCTAAGCTTCTTCTCCAGAAGAGAATACAACAAG--CACGCGAAA-TC 287 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || |||||||| || ||||| || || || ||||| || || |||||||| Sbjct 286 GCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAG 227 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| || || ||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct 226 ACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCAC 167 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || ||||| |||| | ||||| || ||||| || || || | ||| ||||| Sbjct 166 GCAGGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCAT 110 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 |||||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 109 CGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 56 >seq1704 Length=114806 Score = 134 bits (148), Expect = 2e-26 Identities = 355/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| |||||||| |||||||| || ||||| | ||| || |||||| Sbjct 97931 TACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTTCAACGAAATCAACTCCATC 97872 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-TTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||| |||||| || | | || | ||| |||| || | || | Sbjct 97871 CAAGGAAACGGGTTCACCACATTATACACTTTCCCACAC-CCAAGCTTCTCAAGCCAATA 97813 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||||| || ||||||| |||| | ||||| || ||||| || | | ||| Sbjct 97812 ATCCGCAACAAACTCAATATACTGACTCATCTGATCCCCATTCATCCCCAACAACGCACA 97753 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| | | ||| || ||||||| ||||| || || ||||| || | | Sbjct 97752 CGGCAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCATCACGCACAATCCCCTT 97693 Query 129967 AATGGTCTCCGTGCCAGG--TCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGCAAACTC 130023 | | |||| || | | ||| | | || || | || | |||| ||| || Sbjct 97692 CACGCGCTCCTCGCTAAGCTTCTTCTCCAGAAGAGAATACAACAAG--CACGCGAAA-TC 97636 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || |||||||| || ||||| || || || ||||| || || |||||||| Sbjct 97635 GCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAG 97576 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| || || ||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct 97575 ACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCAC 97516 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || ||||| |||| | ||||| || ||||| || || || | ||| ||||| Sbjct 97515 GCAGGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCAT 97459 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 |||||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 97458 CGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 97405 >seq32367 Length=12065 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| ||||||||||||||||| || || || ||||| || || |||||||| || Sbjct 2413 GTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAATGTTAGCCCCGGCATGAGGCC 2472 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| || || || || || ||||||||||| || |||||||| Sbjct 2473 GCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGGAGAAGAAGATTCCTTCCACACA 2532 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||||||| | || || || || ||| Sbjct 2533 CGCGAACGCGACAAGCCGTTCCGCGAAG 2560 >seq37232 Length=10575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || ||||||||||| || || | || || || || || || Sbjct 7155 GCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAAACGTGAGCCCC 7096 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| || ||||||| ||||||||||||||| || || |||||||||||| Sbjct 7095 GGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGGAGAAGAAGATC 7036 Query 130136 CCCTCCAC 130143 || ||||| Sbjct 7035 CCTTCCAC 7028 >seq32508 Length=19167 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA-CCT-GGCATGAGA 130084 |||||| ||||| |||| ||||||| || || ||| | | || ||| |||||||| Sbjct 4083 GTGGAGGCCCTCATCACACAAGATGAGCTCGTTAGAGTA--AGTGATCCTCGGCATGAGG 4140 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | | || | || || || || ||||||||||||||||| |||| Sbjct 4141 CCGCGCTTCTTGAGCTAGTAGATAGCGCAGAAGCTACCAGAGAAGAAGATCCCTTCCATG 4200 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204 ||||| ||||| | || | || |||||||| ||| | | | ||| |||| | Sbjct 4201 CACGCAAACGCGACGAAGCATTCTGCAAAGGAATCGGA---GGAGTTGATCCATTTCAGC 4257 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 130244 ||||||| ||||| || ||| || |||| ||||| || Sbjct 4258 GCCCACTCTGCCTTCTTGGCGACGCAGGGGATGGTCTCGA 4297 >seq40957 Length=105852 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || || || | || | ||| |||||| || ||| | ||| || || || Sbjct 5508 ATCAAACCGGCCAGGTCTCAGTAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCAGC 5449 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | ||||| ||| || || | ||||| |||||||| || ||||| ||||| |||| Sbjct 5448 AACGACAATGATACCGGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 5389 Query 14185 GGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| ||||| | |||||||||| | | || ||| | | || ||| | || || Sbjct 5388 GGTCTGTTCTCTTTCATCATTCCCTCCACCAATTCCAGTCCCTCT---TTGTCTCCCAAC 5332 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 || ||||||||||| | || || || || || ||| || ||| |||| || Sbjct 5331 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 5274 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | ||| || |||| || || ||||| ||||||||||| ||||| Sbjct 5273 AAATCACGGACTCGAGAAGCGCCAACACCAACAAACATCTCAACAAA 5227 >seq44058 Length=119181 Score = 86.0 bits (94), Expect = 8e-12 Identities = 194/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CG 14207 ||||| || ||||| || |||| ||||| || | ||| ||||| | ||||||||| | Sbjct 58867 TCAAACCCGTCCATTTCTGTCAGAAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTTCCT 58808 Query 14208 CAGGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | | || | ||| |||| | |||| | || || || ||||||||||| | ||||| Sbjct 58807 CCGCCAATTCCA---GCACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACA 58751 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGA 14324 || || || ||| || ||| |||| || | ||| || |||| ||||| | Sbjct 58750 ATGCAGGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGAGAAGCACCAA 58693 Query 14325 CACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGAT 14383 ||| ||||||||||| ||||| | | | | | |||| || || ||||| | | Sbjct 58692 TACCAACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCT 58634 Query 14384 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||| || || || ||| | || |||||||| |||||||| Sbjct 58633 TCACCAGCAATAGCCTTGGCTAATAGCGTCTTCCCAGTCCCTGG 58590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618091473715840