Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq32367 150 2e-31 seq42527 134 2e-26 seq36964 134 2e-26 seq37024 125 8e-24 seq1704 125 8e-24 seq32508 122 1e-22 seq40957 114 2e-20 seq44058 105 8e-18 seq37232 96.9 4e-15 seq36378 87.8 2e-12 seq42083 84.2 3e-11 >seq32367 Length=12065 Score = 150 bits (166), Expect = 2e-31 Identities = 207/284 (73%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 94663 TACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAG-CTCTTTGA 94721 |||||| ||| |||| | || |||||||| || ||||||| |||| ||||| Sbjct 2694 TACAGTTTGCTCTTAGAAACCTACATTAAGGACTCCGCGGAGAAGA-GCAGACTCTTCCG 2636 Query 94722 AGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGA 94781 || ||| |||| ||||| || | |||||||| || ||||| |||| ||| | | Sbjct 2635 TGCAATCGAAACTGTTCCTTGCGTAAGGAAGAAAGCCGAGTGGGCCCTGAAATGGATCCA 2576 Query 94782 TACAA-AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCT 94840 | | || | ||| || || || || || |||| || |||||||| || || |||| Sbjct 2575 CTCGACAGATACTTTC-TTCGCGGAACGGCTTGTCGCGTTCGCGTGTGTGGAAGGAATCT 2517 Query 94841 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 94900 ||||||| || ||||||||| || | ||||| |||||||| || |||||||| || | Sbjct 2516 TCTTCTCCGGGAGCTTCTGCGCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGGC 2457 Query 94901 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | |||||||||||||| ||||| ||||||||||| |||||| Sbjct 2456 TAACATTCTCCAACGAGCTGATCTCCCGTGACGAGGGGCTCCAC 2413 >seq42527 Length=94160 Score = 134 bits (148), Expect = 2e-26 Identities = 152/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTG 94804 |||| |||||||| || ||||| |||| ||| | || | | || | |||| || | Sbjct 57784 TCAAGAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGCCAC--CGACT-CCTTCGCGG 57840 Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864 |||| ||| |||| || || ||||| || || ||||||||||| || ||||||||| | Sbjct 57841 AGCGTCTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCA 57900 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 ||| ||||| ||||| || ||||||||||| || ||| || ||||||||||| || | Sbjct 57901 TTTTCTGGCTGAAGAAACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTT 57960 Query 94925 CTCGTGACGAGGGACTCCAC 94944 | ||||||||||| || ||| Sbjct 57961 CACGTGACGAGGGGCTTCAC 57980 >seq36964 Length=242943 Score = 134 bits (148), Expect = 2e-26 Identities = 152/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTG 94804 |||| |||||||| || ||||| |||| ||| | || | | || | |||| || | Sbjct 59567 TCAAGAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGCCAC--CGACT-CCTTCGCGG 59623 Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864 |||| ||| |||| || || ||||| || || ||||||||||| || ||||||||| | Sbjct 59624 AGCGTCTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCA 59683 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 ||| ||||| ||||| || ||||||||||| || ||| || ||||||||||| || | Sbjct 59684 TTTTCTGGCTGAAGAAACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTT 59743 Query 94925 CTCGTGACGAGGGACTCCAC 94944 | ||||||||||| || ||| Sbjct 59744 CACGTGACGAGGGGCTTCAC 59763 >seq37024 Length=156878 Score = 125 bits (138), Expect = 8e-24 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| || ||||| ||||| ||| | || || ||| |||||| || ||||| Sbjct 92 AAGAAAGCCGAGTGGGCGATGAAATGGATCGACGCA---TCGGATTCCTTCGCGGAGCGG 148 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 | | || || || || || || || ||||||||||| || ||||||||| || | Sbjct 149 GTGGTTGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCGATCTTC 208 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||| | || || || ||||||||||| || ||| |||||||||||||| ||||| || Sbjct 209 TGGTTGAAAAAACGCGGTCTCATGCCGGGGCTCACGTTCTCCAACGAGCTGATCTCACGC 268 Query 94930 GACGAGGGACTCCAC 94944 |||||||| || ||| Sbjct 269 GACGAGGGGCTTCAC 283 >seq1704 Length=114806 Score = 125 bits (138), Expect = 8e-24 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| || ||||| ||||| ||| | || || ||| |||||| || ||||| Sbjct 97441 AAGAAAGCCGAGTGGGCGATGAAATGGATCGACGCA---TCGGATTCCTTCGCGGAGCGG 97497 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 | | || || || || || || || ||||||||||| || ||||||||| || | Sbjct 97498 GTGGTTGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCGATCTTC 97557 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||| | || || || ||||||||||| || ||| |||||||||||||| ||||| || Sbjct 97558 TGGTTGAAAAAACGCGGTCTCATGCCGGGGCTCACGTTCTCCAACGAGCTGATCTCACGC 97617 Query 94930 GACGAGGGACTCCAC 94944 |||||||| || ||| Sbjct 97618 GACGAGGGGCTTCAC 97632 >seq32508 Length=19167 Score = 122 bits (134), Expect = 1e-22 Identities = 121/153 (79%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||||||||| || | || |||| |||||||| | || || ||||||||||||||| Sbjct 4233 TTCCTTTGCAGAATGCTTCGTCGCGTTTGCGTGCATGGAAGGGATCTTCTTCTCTGGTAG 4174 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC-AGG-TCTCTGCTTCTCC 94911 |||||||||||| || | |||||||||||| || |||||||| ||| || || | ||| Sbjct 4173 CTTCTGCGCTATCTACTAGCTCAAGAAGCGCGGCCTCATGCCGAGGATCACT--TACTCT 4116 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| |||| |||| ||||| |||||| Sbjct 4115 AACGAGCTCATCTTGTGTGATGAGGGCCTCCAC 4083 >seq40957 Length=105852 Score = 114 bits (126), Expect = 2e-20 Identities = 181/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || | ||||| ||||| || | | ||||| Sbjct 5477 TCAAGAATGTCAGCCCTGTTAGTTGCAGCAACGACAATGATACCGGTATTACCCTCAAAC 5418 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || | Sbjct 5417 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 5361 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | ||| | || || |||||||| ||||||| ||||| ||||| Sbjct 5360 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 5301 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || || |||| || | ||| || || || ||||| ||||||| Sbjct 5300 GGGGCATTCTCTTTGGC--CTTCTTGAACAAATCACGGACTCGAGAAGCGCCAACACCAA 5243 Query 9792 CAAACATCTCCACAAA 9807 |||||||||| ||||| Sbjct 5242 CAAACATCTCAACAAA 5227 >seq44058 Length=119181 Score = 105 bits (116), Expect = 8e-18 Identities = 263/395 (67%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || | ||| | ||||| || | | ||||| || ||||| ||||||| | Sbjct 58903 TTAGTTGCTGCAACGACTATGATACCAGTATTACCCTCAAACCCGTCCATTTCTGTCAGA 58844 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 |||||||| | || ||||| | ||||||||| || | ||||||| | |||| Sbjct 58843 AGTTGGTTCAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCAATTCCAGCACCTCTTTGC 58784 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 |||| || |||||||| ||||||| || || ||||| || ||| || || || Sbjct 58783 CTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAGGGAGCATTCTCTTTGGC--CT 58726 Query 9755 TCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 || || | ||| || || || || || | ||||||||||||||| ||||| | | Sbjct 58725 TCTTGAATAAATCACGAACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACTCAG 58666 Query 9813 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | | |||| || || |||||| | |||||| ||||| || ||| | || Sbjct 58665 AACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCAGCAATAGCCTTGGCTAATAGC 58607 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 9931 ||||| || || ||||| ||| || || | ||| ||| || || ||| Sbjct 58606 GTCTTCCCAGTCCCTGGAGGACCAATAAGAAGAACTCCTTTTGGTATGCGAGCTCCAACA 58547 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || | | |||||||| | ||| ||||| ||||| Sbjct 58546 GCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 58512 >seq37232 Length=10575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || || || ||||||||||| || |||||| || |||| ||||| ||||| || ||| Sbjct 7028 GTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGTGCGATTTTCTGGCTGAAGAAACGCGGT 7087 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 |||||||| || ||| || ||||||||| | || || ||||||||||| || ||| Sbjct 7088 CTCATGCCGGGGCTCACGTTTTCCAACGAGTTGATTTCACGTGACGAGGGGCTTCACTGT 7147 Query 94948 GAGTTTGC 94955 || ||||| Sbjct 7148 GATTTTGC 7155 >seq36378 Length=63125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| || |||||||| || || |||| ||||||||| | Sbjct 47858 AAAGCCATCCATCTCTGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCATCATTCCC--- 47802 Query 9673 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 |||||| ||| | | | ||| | || || |||||||||||||||||||| || Sbjct 47801 ---ACCACCGAGCCCCGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACAC 47745 Query 9727 GATGCATGGT 9736 ||||| ||| Sbjct 47744 AATGCACGGT 47735 >seq42083 Length=66024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 || |||| |||| || ||| ||||| |||| || ||||||| | || || | | | Sbjct 45520 AGGGACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCATACCTGTTGAAG 45579 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | || ||| |||| | || ||| ||||||| ||| | || || | || || Sbjct 45580 GTTCAAGGGCAGGTTG-TGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 45638 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| |||||||| |||| | |||| || || |||||| ||| | ||| Sbjct 45639 TCACAAGGATGACATTGAATCTGCTGTTAAGACTTATCACTTGATGTCTCAACGGTGGTT 45698 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| ||| | || || || ||||||||||| ||||| || || || Sbjct 45699 CACTCATGCATCCCCGACACTTTTCAATGCTGGAACACCTAGGCCTCA 45746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582936623647360