Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1704 167 3e-36 seq42527 149 7e-31 seq36964 149 7e-31 seq32367 134 2e-26 seq37232 114 1e-20 seq37024 114 1e-20 seq32508 113 5e-20 >seq1704 Length=114806 Score = 167 bits (184), Expect = 3e-36 Identities = 359/529 (68%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| ||| || |||||| ||| ||| || | |||||| || |||| Sbjct 97106 TGTACAAGAAAGCCCTCGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTCTCCCACGACC 97165 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | || |||||| ||||| ||| ||| | || ||||||| ||||| |||| Sbjct 97166 TCCGCGACTGGGACTCCCTCAACGACGGCGAACGCCACTTCATCACCCACGTCCTCGCCT 97225 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | |||||| | | | | || || || | Sbjct 97226 TCTTCGCCGCCTCCGACGGCATCGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAAGAAG 97285 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| || ||||| || || | ||||||| | ||| ||| || |||| |||||| Sbjct 97286 TCCAAATCGCCGAAGCACGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCAC 97344 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||||| |||| ||| || | || | | ||||||| | ||||| | Sbjct 97345 TCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCACCGAGAAACACCGC 97404 Query 59892 CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 || |||| ||| | || || ||||| || || | ||||| || ||||| ||| | Sbjct 97405 CTCTTCCACGCCGTCGAAACCATCCCCTGC-GTCGCGAAGAAAGCCGAGTGGGCGATGAA 97463 Query 59951 GTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| || | | | | || || || | || | | || || || |||||||||| Sbjct 97464 ATGGATCGACGCATCG-GATTCCTTCGCGGAGCGGGTGGTTGCCTTCGCCTGCGTGGAAG 97522 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | ||||||||||| || ||||| || || |||||| | ||||| || || ||||||| Sbjct 97523 GGATCTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGTTGAAAAAACGCGGTCTCATGC 97582 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | ||||||||||||||||| || || |||||||| || || Sbjct 97583 CGGGGCTCACGTTCTCCAACGAGCTGATCTCACGCGACGAGGGGCTTCA 97631 >seq42527 Length=94160 Score = 149 bits (164), Expect = 7e-31 Identities = 355/529 (67%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| | | |||||| |||| || | || | Sbjct 57454 TGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTATCGTCCGATC 57513 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||| |||| ||| ||| | || ||||||| ||||| |||| Sbjct 57514 TCCGCCACTGGGACTCCCTCACCGACGGCGAACGCCACTTCATCACCCACGTCCTCGCCT 57573 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | |||||| | | | | || ||||| | Sbjct 57574 TCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAAG 57633 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| |||||||| || | |||||| | ||| ||| | |||| |||||| Sbjct 57634 TCCAATCCGCCGAGGCACGCGCCTTCTACAGCTTCCAGATCGCG-ATCGAGAACATCCAC 57692 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||||| |||| ||| || | || | | ||||||| | | || || | Sbjct 57693 TCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAATCCAAC 57752 Query 59892 CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 || ||||| ||| | || || ||||| || || || | ||||| || ||||| || | Sbjct 57753 CTCTTCCGCGCCGTGGAAACCATCCCCTGC-GTCAAGAAGAAAGCCGAGTGGGCGTTGAA 57811 Query 59951 GTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| || || | || || || | |||||| | ||||| || || ||||||| Sbjct 57812 ATGGATCGACGCCACCGAC-TCCTTCGCGGAGCGTCTCGTCGCTTTCGCCTGTGTGGAAG 57870 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | ||||||||||| || ||||| || ||||||||||| || || || || ||||||| Sbjct 57871 GGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAGAAACGCGGTCTCATGC 57930 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | || ||||||||||||||||| || |||||||| || || Sbjct 57931 CGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCA 57979 >seq36964 Length=242943 Score = 149 bits (164), Expect = 7e-31 Identities = 355/529 (67%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| | | |||||| |||| || | || | Sbjct 59237 TGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTATCGTCCGATC 59296 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||| |||| ||| ||| | || ||||||| ||||| |||| Sbjct 59297 TCCGCCACTGGGACTCCCTCACCGACGGCGAACGCCACTTCATCACCCACGTCCTCGCCT 59356 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | |||||| | | | | || ||||| | Sbjct 59357 TCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAAG 59416 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| |||||||| || | |||||| | ||| ||| | |||| |||||| Sbjct 59417 TCCAATCCGCCGAGGCACGCGCCTTCTACAGCTTCCAGATCGCG-ATCGAGAACATCCAC 59475 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||||| |||| ||| || | || | | ||||||| | | || || | Sbjct 59476 TCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAATCCAAC 59535 Query 59892 CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 || ||||| ||| | || || ||||| || || || | ||||| || ||||| || | Sbjct 59536 CTCTTCCGCGCCGTGGAAACCATCCCCTGC-GTCAAGAAGAAAGCCGAGTGGGCGTTGAA 59594 Query 59951 GTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| || || | || || || | |||||| | ||||| || || ||||||| Sbjct 59595 ATGGATCGACGCCACCGAC-TCCTTCGCGGAGCGTCTCGTCGCTTTCGCCTGTGTGGAAG 59653 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | ||||||||||| || ||||| || ||||||||||| || || || || ||||||| Sbjct 59654 GGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAGAAACGCGGTCTCATGC 59713 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | || ||||||||||||||||| || |||||||| || || Sbjct 59714 CGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCA 59762 >seq32367 Length=12065 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 |||| || | || || || || |||||||||||||||||||| || ||||| || | Sbjct 2552 AACGGCTTGTCGCGTTCGCGTGTGTGGAAGGAATCTTCTTCTCCGGGAGCTTCTGCGCCA 2493 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||| || ||||| |||||||||||||| || | ||||||||||||||||| | Sbjct 2492 TCTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGGCTAACATTCTCCAACGAGCTGATCT 2433 Query 60100 CCCGGGACGAGGGCCTCCA 60118 |||| |||||||| ||||| Sbjct 2432 CCCGTGACGAGGGGCTCCA 2414 >seq37232 Length=10575 Score = 114 bits (126), Expect = 1e-20 Identities = 286/427 (67%), Gaps = 18/427 (4%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||| ||||||||||| || |||||||| ||||||||||| || || || || Sbjct 7027 CGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGTGCGATTTTCTGGCTGAAGAAACGCGG 7086 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCA 60121 ||||||||||| || | || ||||||||| ||||||| || |||||||| || || Sbjct 7087 TCTCATGCCGGGGCTCACGTTTTCCAACGAGTTGATTTCACGTGACGAGGGGCTTCACTG 7146 Query 60122 GGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TAT 60178 || ||||| | | || || || ||| || | | | |||| | | Sbjct 7147 TGATTTTGCTTGTTTGTTGTACTCGTTGCT-GAGGACGAA--GCTTAGCGAGGAGCGTGT 7203 Query 60179 TCACAAGATTGTTCAGTGGGCT--TGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCT 60235 | |||||| ||| | | ||| || | ||||| ||||| | || ||||| Sbjct 7204 GAAGGGGATTGT---GTGTGATGCGGTGGAGATTGAGAGGGAGTTTGTGTGCGACGCGCT 7260 Query 60236 TCCATGCAAACTCATAGGTATGGACGCTGGAGA---AATGACGCAGTACATTCAGTTTGT 60292 || ||| | | || ||| | ||| || |||| ||||| ||| ||||||| Sbjct 7261 GCCGTGCCGGTTGGTGGGGATGAA---TGGGGATTTGATGAGTCAGTATATTGAGTTTGT 7317 Query 60293 CGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTT 60352 ||||| || | ||| || |||| || | || || ||| | || || || Sbjct 7318 GGCGGATCGGTTGTTGGGTGAGCTTGGGTGTGGGAAGGTGTATGGTGTGCAGAATCCGTT 7377 Query 60353 CGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGG 60412 || |||||||||| || |||||| | |||||||| ||||||||||||||||| || || Sbjct 7378 TGATTGGATGGAGATGATTTCGTTGCAGGGGAAGACTAACTTCTTTGAGAAGCGCGTTGG 7437 Query 60413 GGATTAT 60419 || ||| Sbjct 7438 AGAGTAT 7444 >seq37024 Length=156878 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||||||||| ||||||||||| || ||||| || || |||||| | Sbjct 155 GCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGTTG 214 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 ||||| || || ||||||||||| || | ||||||||||||||||| || || |||||| Sbjct 215 AAAAAACGCGGTCTCATGCCGGGGCTCACGTTCTCCAACGAGCTGATCTCACGCGACGAG 274 Query 60111 GGCCTCCA 60118 || || || Sbjct 275 GGGCTTCA 282 >seq32508 Length=19167 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGGAGCATCATTTGCACAACGTCTCAT 59989 || ||||| ||||| || | ||||| | |||| | || |||||| || | || | Sbjct 4271 AAGGCAGAGTGGGCGCTGAAATGGATCAACTCCTCC-GATTCCTTTGCAGAATGCTTCGT 4213 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||| |||||||||||||| ||||| ||||| | || ||| Sbjct 4212 CGCGTTTGCGTGCATGGAAGGGATCTTCTTCTCTGGTAGCTTCTGCGCTATCTACTAGCT 4153 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| ||||| |||||||||||| | | | || ||| |||||||| || | | || || Sbjct 4152 CAAGAAGCGCGGCCTCATGCCGAGGATCACTTACTCTAACGAGCTCATCTTGTGTGATGA 4093 Query 60110 GGGCCTCCA 60118 ||||||||| Sbjct 4092 GGGCCTCCA 4084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548219929916160