Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq32376 87.8 1e-12 seq14423 87.8 1e-12 >seq32376 Length=6472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||| | ||||||||| || || |||| |||||| | | Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 27850 GA--CGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 || | || ||||| || || || |||| | || |||||||| ||| | || || Sbjct 707 GATACCATTGACAAT--GTGAAGACGAAAATTCAG--GACAAAGAGGGTATCCCTCCAGA 652 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || || || | |||||||| || |||||| | || || | | | | |||| | ||||| Sbjct 651 TCAACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTA 592 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| || ||| || | |||||||| |||| ||| | || ||| Sbjct 591 CAACATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGGC 540 >seq14423 Length=23748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||||| || || || ||||| |||| || ||||| | Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||||| ||||| ||||| | || || | Sbjct 11470 GATACCATTGACAAT--GTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATC 11527 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || |||||||| || | |||| | | | ||||||| Sbjct 11528 AGCAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACA 11587 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 11588 ACATTCAAAAGGAG 11601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355669556386128