Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq14423 109 5e-19 seq40108 105 6e-18 seq38321 95.1 1e-14 seq41040 91.5 1e-13 seq14855 86.0 5e-12 seq32376 84.2 2e-11 seq39663 82.4 7e-11 >seq14423 Length=23748 Score = 109 bits (120), Expect = 5e-19 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| ||||| || || | |||||| || || ||| ||| || | Sbjct 12107 ACAAAAATTTG--CATGCCACCTCTCAATCGAAGCACCAAGTGAAGGGTGGACTCCTTCT 12050 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| ||||| || || || | | | || ||||||||||| || ||||| ||||| | Sbjct 12049 GGATATTGTAATCAGCTAGGGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATAAGCC 11990 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||| | || | || |||||| ||| ||| ||| |||| | | | | Sbjct 11989 TCTGCTGGTCTGGAGGGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGG 11930 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || || || || || | ||||| |||| || |||| || || ||||| |||| Sbjct 11929 TGTCCGAGGATTCAACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAAATTT 11870 Query 39281 GCAT 39284 |||| Sbjct 11869 GCAT 11866 Score = 100 bits (110), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| ||||| || || | ||||||||| || ||| ||| || | Sbjct 11879 ACAAAAATTTG--CATGCCACCTCTCAATCGAAGCACCAAATGAAGGGTGGACTCCTTCT 11822 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| || || || | | | || ||||| ||||| || ||||| || | | Sbjct 11821 GGATGTTGTAATCAGCTAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAAAATCAACC 11762 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||| || | || | || |||||| ||| ||| ||| |||| | | | | Sbjct 11761 TCTGCTGATCTGGAGGGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGG 11702 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || ||||| || || | ||||| |||| || |||| || ||||||||||| | Sbjct 11701 TGTCCGAGGACTCAACCTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTAACAAAGATCT 11642 Query 39281 GCAT 39284 |||| Sbjct 11641 GCAT 11638 Score = 100 bits (110), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || ||| || || || || ||||| ||||| |||| | | Sbjct 12308 CGCAAGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCA 12249 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||||||||| | ||||||||| |||||| | || ||| || Sbjct 12248 TCTTCAAGCTGTTTCCCGGCAAATATAAGCCTCTGCTGGTCTGGTGGG-ATGCCCTCCTT 12190 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| || || ||| | | | | ||||| ||| |||||| |||| || Sbjct 12189 ATCCTGAATCTTAGCTTTCACATTATCAATGGTATCTGAGCT---CTCCACCTCCAAAGT 12133 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || ||||| |||||||| Sbjct 12132 TATGGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 12094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| || || || ||||||||||| ||||| || || | Sbjct 12536 CGCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTCCGCCCA 12477 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || | ||| ||||| ||||| ||||| | |||||||| ||||||| | | |||||| Sbjct 12476 TCTTCCAACTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGG-ATACCCTCTTT 12418 Query 39189 GTCCATGATTTTC 39201 |||| ||| ||| Sbjct 12417 GTCCTGGATCTTC 12405 >seq40108 Length=192235 Score = 105 bits (116), Expect = 6e-18 Identities = 173/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | | || ||||||||||| || || ||| || | Sbjct 160788 ACAAAAATTTG--CATGCCTCCACGAAGCCGCAACACCAAATGCAGAGTAGACTCCTTCT 160731 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| ||||| |||| | | || ||||||||||| || ||||| || || | Sbjct 160730 GAATGTTATAATCAGCAAGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCC 160671 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||| | || | || ||| |||||| || || ||| | | | | | Sbjct 160670 TCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATAG 160611 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 |||| ||| ||||| |||| ||| || | ||||| |||| || || ||||| | Sbjct 160610 TATCTGAGCT---TTCCACCTCCAACGTTATTGTCTTTCCTGTCAAGGTCTTCACAAAAA 160554 Query 39278 TTTGCAT 39284 ||||||| Sbjct 160553 TTTGCAT 160547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| ||||| || || | |||||||| || ||| ||| || | Sbjct 160560 ACAAAAATTTG--CATGCCGCCTCTCAATCGAAGAACCAAATGAAGGGTGGACTCCTTCT 160503 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| || | || | | || ||||| ||||| || ||||| ||||| | Sbjct 160502 GGATGTTGTAATCAGCCAAGGTCCTCCCATCCTCAAGTTGTTTCCCAGCAAAAATAAGCC 160443 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||||| || | | |||||||||| ||| || |||| | | | | Sbjct 160442 TCTGCTGGTCGGGTGGTATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATGG 160383 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || || || || || | ||||| |||| || |||| || || |||||||| | Sbjct 160382 TGTCTGAGGATTCGACCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCT 160323 Query 39281 GCAT 39284 |||| Sbjct 160322 GCAT 160319 >seq38321 Length=259108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || |||||||| || |||| || ||||| Sbjct 81890 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGGCCGTCTTCCAGCTGC 81949 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || ||||||||||||| ||||||| | | ||| ||||| ||| || Sbjct 81950 TTCCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATTCCCTCCTTGTCTTGGATCTT 82008 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| |||||||| || | ||||| | || |||| Sbjct 82009 GGCCTTGA-CGTTGTCGATTGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTCCCCG 82067 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || ||||| |||||||| Sbjct 82068 TTAGGGTTTTCACGAAGATCTGCATCTT 82095 >seq41040 Length=490441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | || || ||| |||||| || || || ||||| || | ||||| || Sbjct 179214 CGCAACACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAATGTTCTGTCA 179273 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| || ||||| || | ||||||||| | || | || ||||||| Sbjct 179274 TCCTCAAGCTGTTTGCCAGCGAATATGAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTG 179333 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| ||| | | | | | | | | | | || || ||| |||||| || | || Sbjct 179334 TCC-TGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCT---CTCCACCTCAAGGGT 179389 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| || || |||||||| ||||| Sbjct 179390 GATGGTCTTTCCAGTCAATGTCTTCACAAAGATCTGCAT 179428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| ||||| || || ||||| ||||| || || | || || Sbjct 179447 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 179506 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || ||||||||||||| ||||||| | || || || || Sbjct 179507 CAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTATCTT 179565 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||| || | | | | ||||| ||| || || | ||||| | | Sbjct 179566 GAATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 179625 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || || |||||||||||||||| Sbjct 179626 TGCCAGTAAGGGTCTTGACAAAGATTTGCATCT 179658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||||||||| || || ||||| ||||| || || | || || Sbjct 173559 CACCAAATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 173618 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||| ||||| | ||| || ||||||||||||| ||||||| Sbjct 173619 CAGCTGCTTGCCAGAAAAAATGAGACGCTGCTGGTCCGGTGGG 173661 >seq14855 Length=14869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 ||||| || | | ||| | || | ||| || ||| ||| || || ||||||||||| Sbjct 12094 AAGCCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGAATATTATAATCA 12153 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTG 39174 || || || ||| | || || | ||| ||||| ||||| || || | ||||||||| | Sbjct 12154 GCCAGAGTACGTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCTCTGCTGGTCTGGA 12213 Query 39175 GGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGAC 39231 || | | ||| ||||| ||| ||| || | | | | ||||| ||| Sbjct 12214 GGAATACCCTCCTTGTCTTGGATCTTCGCCTTAACATTGTCAATTGTATCAGAGCT---T 12270 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| |||| |||||| | || || |||| || || ||||||||||||||| Sbjct 12271 TCCACCTCCAATGTGATAGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCATC 12324 >seq32376 Length=6472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| ||||| | || | |||||||||||| ||| ||| || | Sbjct 298 ACAAAAATTTG--CATGCCACCTCTCAGTCGCAGCACCAAATGTAGGGTGGACTCCTTCT 355 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| || | || | | | || ||||| ||||| || ||||| ||||| | Sbjct 356 GGATGTTGTAATCAGCCAAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCC 415 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||| || | || | || ||| |||||| || || ||| | | | | | Sbjct 416 TCTGCTGATCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGATTTCACATTATCAATAG 475 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 |||| ||| || || |||| || || | ||||| |||| || || ||||| | Sbjct 476 TATCTGAGCT---TTCAACCTCCAAAGTTATTGTCTTTCCTGTCAAGGTCTTGACAAAAA 532 Query 39278 TTTGCAT 39284 ||||||| Sbjct 533 TTTGCAT 539 >seq39663 Length=443811 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 ||||| || | | ||| | || | ||| || ||| ||| || || ||||||||||| Sbjct 344571 AAGCCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTATAATCT 344630 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTG 39174 || | ||||| | || || | ||| ||||| ||||| || || ||||||||||| | Sbjct 344631 GCCAAAGTTCGACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGA 344690 Query 39175 GGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCC 39234 || | | |||||||||| || ||| || | | | | |||||| ||| Sbjct 344691 GGAATACCCTCTTTGTCCTGAATCTTCGCCTTAACATTGTCAATTGTATCGGAGCTTTCC 344750 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || |||| || || |||||||||||||| Sbjct 344751 ACCTCCAATGTAATGGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 344800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429312827091632