Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq41040 89.7 4e-13 >seq41040 Length=490441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || || ||||| ||||| |||||||| |||| |||| || ||| || | |||||||| Sbjct 167102 GTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCCTCAAGCTGTTTGCCA 167161 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || ||||| ||||||||| || | |||||||||||| |||||| ||| Sbjct 167162 GCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGAATTTTAGCCTTC 167221 Query 101162 ACAT 101165 |||| Sbjct 167222 ACAT 167225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || || ||||| ||||| |||||||| |||| |||| || ||| || | |||||||| Sbjct 178320 GTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCCTCAAGCTGTTTGCCA 178379 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 ||| | || ||||| ||||||||| || | |||||||||||| |||||| Sbjct 178380 GCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGAATTTT 178432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||| | ||| | |||||| ||||| || || || ||||| |||| |||| | ||| Sbjct 178761 AACACAAGGTGGAGAGTTGACTCTTTCTGGATGTTATAATCTGCCAGAGTTCGGCCATCC 178820 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 || | |||||||||||| | ||||||||||| || ||| ||| | || || ||||| Sbjct 178821 TCAAGTTGTTTGCCCGCGAAAATAAGCCTTTGCTGATCTGGGGGAATACCCTCCTTGTCT 178880 Query 101147 GCAATTTTTTGTTTCACAT 101165 |||||| ||||||| Sbjct 178881 TGAATTTTGGCCTTCACAT 178899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||| | || || ||||| |||| ||||| ||||||| ||| || |||||| Sbjct 167772 CACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTC 167831 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | ||||| || ||| | || ||||| ||||||||| || | ||| |||||||| Sbjct 167832 AAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 167891 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 |||||| ||||||| | | | || || | | | || | ||| || || || Sbjct 167892 AATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 167951 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || | || || | |||||||||||| Sbjct 167952 TCCAGTGAGGGTCTTCACAAAAATTTGCAT 167981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409438802764176