Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq35886 125 1e-23 seq42083 84.2 3e-11 seq37232 84.2 3e-11 >seq35886 Length=22054 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | ||||||||| ||||| || |||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| | ||| ||||| || || | ||| |||||||| || || || | |||||| Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||| || ||| | || ||||| | ||| ||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||||| ||||||||||| | || |||||| || Sbjct 12239 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCT 12274 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || || || | ||| | ||| || ||||| | || | |||||| || | || || Sbjct 11699 CCCCCTTGGTCAACATAGCGGGCAGTATTATTGAACACGCGCAACATGGGGACGATTCCA 11758 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| ||||| || ||| ||| |||||||| |||| ||||| || || || Sbjct 11759 TTGGATGTCCCATTAGTCCCACCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAG 11818 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || ||||| || || || ||| Sbjct 11819 ACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCCTTCAAAGTCTCATATATA 11878 Query 78339 CCCTCTATACTGTCATC 78355 ||||||||||| ||||| Sbjct 11879 CCCTCTATACTATCATC 11895 >seq42083 Length=66024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || | || ||| |||| || ||| Sbjct 46252 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACCA 46193 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || ||||| ||||| ||| ||||| || | || ||||| || || || Sbjct 46192 TTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGAA 46133 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||||||| || || | ||| || ||||| ||||| || || Sbjct 46132 ACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAATC 46073 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||||||||| ||||| ||||| Sbjct 46072 CCCTCTATACTATCATCTTTCATG 46049 >seq37232 Length=10575 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||||||||| ||||| || || || | ||| || ||||| ||||| ||| Sbjct 7161 AAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAAACGTG 7102 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || ||||| || ||||| || || || ||| || || ||| Sbjct 7101 AGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGGAGAAG 7042 Query 48258 AATATGCCTTCTACGG 48273 || || ||||| |||| Sbjct 7041 AAGATCCCTTCCACGG 7026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694282703080960