Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq35886 131 2e-25 seq42083 105 1e-17 >seq35886 Length=22054 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||| ||||| ||||||||||||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| | | | | ||| ||||| | ||| |||||||| ||||| || | |||||| Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | || ||||| | ||| ||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 ||||| ||||||||||| | || |||||| || Sbjct 12239 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCT 12274 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || || || | ||| | |||||| ||||| | || | |||||| || | || || Sbjct 11699 CCCCCTTGGTCAACATAGCGGGCAGTATTATTGAACACGCGCAACATGGGGACGATTCCA 11758 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || ||| ||| |||||||| ||||||||| || || ||| Sbjct 11759 TTGGATGTCCCATTAGTCCCACCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAG 11818 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || |||| ||| | |||||| ||||| || ||||| || Sbjct 11819 ACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCCTTCAAAGTCTCATATATA 11878 Query 76934 CCCTCTATACTATCATC 76950 ||||||||||||||||| Sbjct 11879 CCCTCTATACTATCATC 11895 >seq42083 Length=66024 Score = 105 bits (116), Expect = 1e-17 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || ||| |||| || || Sbjct 46252 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACCA 46193 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATG-CACGAATATTACTAATAGA 76872 || || || ||||| ||||| ||| ||||| || |||| ||||||| || || ||| Sbjct 46192 TTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCC-CATGGCACGAATGTTGTGAACAGA 46134 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||||||| ||| || | |||||| ||||| || ||||| || Sbjct 46133 AACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAAT 46074 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 ||||||||||||||||| ||||| Sbjct 46073 CCCCTCTATACTATCATCTTTCATG 46049 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||| || ||||||||||||||||| || ||| | | | Sbjct 45734 GTTCCAGCATTGAAAAGTGTCGGGGATGCATGAGTGAACCACCGTTGAGACATCAAGTGA 45675 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || || | || | | | ||| || || | ||| |||||||| ||||| || | |||||| Sbjct 45674 TAAGTCTTAACAGCAGATTCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 45616 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | || ||| || | | ||||||| |||||| | || | Sbjct 45615 CATGTGCTGAGGCCTCTCCACAACCTGCCCTTGAACCTTCAACAGGTATGACCTCTCAAG 45556 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || || ||||| || | || |||||| || || |||||||| Sbjct 45555 CGTCTTGAACCCAAAGTAATCATAGTCAAAGTCCCTATCATAAATAAT 45508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712538151060480