Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq24802 324 1e-83 seq22352 318 6e-82 seq23603 239 5e-58 seq22291 235 6e-57 seq14014 187 3e-42 seq36730 86.0 7e-12 >seq24802 Length=1610 Score = 324 bits (358), Expect = 1e-83 Identities = 225/254 (89%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||| | ||||||||||||||||||| | ||||||| ||| |||| |||||| | |||| Sbjct 253 CTCTATCCCCCAGGCTGGAGTGCAGTGACATGATCTCGGCTTACTGAAACCTCGGTCTCC 194 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 193 CAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCC 134 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 ||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 133 ACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGG 74 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 |||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 73 CTGGTCTCAAACCCCTGACCTCAGGTGATCCATCTGCCTCGGCCTCCCGAAGTGCTGGGA 14 Query 8589 TTACAGGCATGAGC 8602 ||||||| ||||| Sbjct 13 -TACAGGCGTGAGC 1 Score = 284 bits (314), Expect = 1e-71 Identities = 232/280 (83%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||| | Sbjct 1120 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCTG 1061 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| ||||||| || |||||||||||||||||||| |||||||||||| ||||||| Sbjct 1060 CCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGC 1001 Query 8464 AAGCCACC---ACGCCAAGCTAATT----TTTGTATTTTTAGTAGAGAGAGGGTTTCACC 8516 |||||| | | | || | || ||| | |||||||||||| |||||||||| Sbjct 1000 CTGCCACCAGGATGGCTAGTTTTTTGCAGTTTTTTTTTTTAGTAGAGGCGGGGTTTCACC 941 Query 8517 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC 8576 |||| |||||| ||||||||| ||||||||||| ||||||| || | ||||||||||| Sbjct 940 GTGTTAGCCAGGATGGTCTCGATCTCCTGACCTC--GTGATCCGCCCGTCTCGGCCTCCC 883 Query 8577 AAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||| |||||||||||||||||| |||||| | ||| |||| Sbjct 882 AAAATGCTGGGATTACAGGCATAAGCCACGGTGCCCGGCC 843 >seq22352 Length=1308 Score = 318 bits (352), Expect = 6e-82 Identities = 232/268 (87%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||| ||||||||||||| |||||||||| |||||| |||||||||||||| ||| || Sbjct 148 CTCTTTTGCCCAGGCTGGGGTGCAGTGGCGGGATCTCATCTCACTGCAACCTCTGCCCCC 207 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||||||| |||||||||||||||||||| ||||||||||||||| ||| || Sbjct 208 CGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGTGCCCTCC 267 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGTTGGCCAG 8527 |||| ||| |||||||||||||||||||||||| | ||||| ||||||||||||| Sbjct 268 ACCATGCCCGAATAATTTTTGTATTTTTAGTAGAGACGTACGTTTCTCCATGTTGGCCAG 327 Query 8528 GCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGG 8587 |||||||| ||| ||||||||| | |||||||||| |||| |||||||||||||||| || Sbjct 328 GCTGGTCTTGAATTCCTGACCTTAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTAGG 387 Query 8588 ATTACAGGCATGAGCCACCGCGCCTGGC 8615 |||||||||||||||||| | ||||||| Sbjct 388 ATTACAGGCATGAGCCACTGTGCCTGGC 415 >seq23603 Length=2009 Score = 239 bits (264), Expect = 5e-58 Identities = 196/236 (83%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 8391 ACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTG 8450 ||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||||||| Sbjct 1193 ACTGCAAGCTCCGCCTCCCAAGTTCACGCCATTTTCCTGCCTCAGCCTCCCCAGTAGCTG 1134 Query 8451 GGATTACAGGCAAAAGCCACCACGCCAAGCTAA--------TTTTTGTATTTTTAGTAGA 8502 ||| |||||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 1133 GGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTTTTTTTTGTATTTTTAGTAGA 1074 Query 8503 GA-GAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCAC 8561 || |||||||||| |||| |||||| |||||| || ||||||||||| ||||||| | Sbjct 1073 GACTGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTC--GTGATCCGC 1016 Query 8562 CTGCCTCGGCCTCCC-AAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||| |||||||| |||||||||||||||| ||| |||||||| | ||| |||| Sbjct 1015 CTGCCTTGGCCTCCCGAAAGTGCTGGGATTACCGGCGTGAGCCACTGTGCCAGGCC 960 Score = 214 bits (236), Expect = 2e-50 Identities = 175/209 (84%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 8399 CTCCGCCTCCCGGGTTCAAGCTATT-CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTAC 8457 ||| ||||||| ||||||||| || ||||||||||||||||| |||||||||| |||| Sbjct 625 CTCTGCCTCCCAGGTTCAAGCGATAACTCCTGCCTCAGCCTCCTAAGTAGCTGGGGTTAC 684 Query 8458 AGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACC 8516 ||||| |||||||||| |||||||||||||||||||||||| | |||| || | Sbjct 685 AGGCATGTACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAAACGAGGCCTT-TTC 743 Query 8517 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC 8576 |||| | |||| ||||||||| || ||| ||||| ||||||||| |||| ||||||| Sbjct 744 ATGTGGCTCAGGTTGGTCTCGACCTTCTGGCCTCAAATGATCCACCCACCTCAGCCTCCC 803 Query 8577 AAAGTGCTGGGATTACAGGCATGAGCCAC 8605 ||||| ||||||||||||||||||||||| Sbjct 804 AAAGTACTGGGATTACAGGCATGAGCCAC 832 >seq22291 Length=715 Score = 235 bits (260), Expect = 6e-57 Identities = 216/271 (80%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||| ||||||||| | |||| ||||||| ||||||||| Sbjct 549 TCTCTCTCTGTCACCCAGGCTTGAGTGCAGTAGAACAATCTTGGCTCACTACAACCTCCG 490 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||| | ||||||| | ||| ||||||||||||| ||||| ||||||||||||| Sbjct 489 CCTCTCAGGTTCAAATGACTCTTGTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGTGT 430 Query 8464 AAGCCACCACGCCAAGCTAA--TTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGT 8520 | |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| Sbjct 429 GAACCACCAAGCCTGGCTAAATTTTCTGTATTTTTAGTAAAGACGGGGGTTTCACTATGT 370 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 |||||||||||| ||||||||||| || || || ||||| ||||| ||| || | || Sbjct 369 TGGCCAGGCTGGCCTCGAACTCCTAGCCACAAGTCATCCAAATGCCTTGGCTTCTCCGAG 310 Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 || | |||||| ||||||||||| ||| ||| Sbjct 309 TGTTTGGATTATAGGCATGAGCCTCCGTGCC 279 Score = 129 bits (142), Expect = 6e-25 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 8506 AGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGC 8565 || ||||||| ||||| ||||||||| || ||||||||||||||| ||| ||||| Sbjct 3 AGAGTTTCACTGTGTTGCCCAGGCTGGCCTTGAACTCCTGACCTCAAACGATATGCCTGC 62 Query 8566 CTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 || |||||||||||||||| |||||||| ||||||||||||| |||||||| Sbjct 63 CTTGGCCTCCCAAAGTGCTAGGATTACAAGCATGAGCCACCGTGCCTGGCC 113 >seq14014 Length=572 Score = 187 bits (206), Expect = 3e-42 Identities = 202/266 (76%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||| ||||||| ||| ||| |||||||||||||| ||||| |||| ||||| ||| Sbjct 221 TCTTACTCTGTCGCCTAGGTTGGAGTGCAGTGGCATGATCATGGCTCGCTGCAGCCTTGA 280 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCA--GAGTAGCTGGGATTACAGGC 8461 ||||| ||| ||| | |||||| |||||| || |||||||||||| ||||| Sbjct 281 CCTCCTGGGCTCAGGTGATTCTCTCACCTCAGTGCCCTTGGAGTAGCTGGGACTACAGAT 340 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520 | | | ||| |||||||| || ||||| ||||||| |||||| |||| | Sbjct 341 GTACACTATCAC-------TAATTTTTTGTGTTTTTTGTAGAGATGGGGTTTTGCCATAT 393 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 || ||||||||||| || |||||| |||| |||||| ||||||| |||||||| ||| Sbjct 394 TGCTCAGGCTGGTCTTGAGCTCCTGGGCTCAAGTGATCTGCCTGCCTTGGCCTCCCGAAG 453 Query 8581 TGCTGGGATTACAGGCATGAGCCACC 8606 ||||||||||||||| ||||||||| Sbjct 454 TGCTGGGATTACAGGTGTGAGCCACC 479 >seq36730 Length=97907 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8392 CTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGG 8451 |||||||||||| ||||| ||||||||| |||||| || |||||||||| ||||||||| Sbjct 2087 CTGCAACCTCCGACTCCCAGGTTCAAGCGATTCTCATGTCTCAGCCTCCCAAGTAGCTGG 2146 Query 8452 GATTACA 8458 || |||| Sbjct 2147 GACTACA 2153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521198156969600