Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 183 4e-41 seq9 167 3e-36 seq1 105 8e-18 seq2896 100 3e-16 >seq11 Length=35963958 Score = 183 bits (202), Expect = 4e-41 Identities = 417/623 (67%), Gaps = 6/623 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||| || || || || || |||| || || ||||| || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || ||||| ||||| || || | ||| |||||||| ||||| | | || | | | ||| Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAG-CACAGAAGCTTCCA 2850623 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || |||||||||||||| || ||||| |||| ||| | || | | | ||| Sbjct 2850622 GAGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAG--GATTCTG 2850565 Query 24306 T--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| ||||| | ||||| || || ||| | |||||||| ||||| || | Sbjct 2850564 AACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAA 2850505 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 || | || | | |||||| ||| ||| || | |||||| |||| | |||| Sbjct 2850504 CCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGAC 2850445 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 | ||||| || ||||| || |||||||| || ||||| |||||||||||| | |||| Sbjct 2850444 TGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCT 2850385 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | | || | ||| | ||| | | | || | |||||| || || |||||| Sbjct 2850384 CAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAG 2850325 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 ||| || || || || | || ||||| | ||| | |||| | || || || | Sbjct 2850324 AGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCT 2850265 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| | || || | ||| | ||| ||||| || | ||||| || ||||| || | Sbjct 2850264 CCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGG 2850205 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 24723 | || |||||||| | |||||| | | | |||||||||||||| || ||| | | || Sbjct 2850204 CTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGTCTG 2850145 Query 24724 GATTTTTTGCAAGGATTGGTTCC 24746 ||||| || || | ||| ||| Sbjct 2850144 GATTTGGAGCCAGAAGTGGCTCC 2850122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||||| || || || |||||| | | || | |||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 54485 TACGTCTCGATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 || || | || ||| || ||||| |||| ||| |||||||| || | || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAGCAAGTAGGATTTTTC 54600 ||||||||||||||||||||||| | ||||| || | |||| | |||||| | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAAC-AACTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 54601 CAAAGTTTTAAAACCAAAATA 54621 | ||||| |||||||| || Sbjct 31406265 AAGGGTTTTGAAACCAAAGTA 31406245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | |||| |||| | || |||||||| |||||| Sbjct 31406825 TCCACCTTGATCAACATAGCGAGCAGTATCATTAAAAACACGCAGCATTGGAACAATACC 31406766 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||| || || || |||| || || || || || Sbjct 31406765 ATTGGATGTCCCATTAGTTCCCCGGATGTAACTGCCTGTGGCTCGGATGTTGTGAACAGA 31406706 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| || || || || |||||||| || Sbjct 31406705 AACACCAATTCCTCCAGCTGATTTGCTGATCGCAGCACACTCCTTCAAAGTATCATATAT 31406646 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 31406645 TCCCTCTATACTATCATCTTTCAT 31406622 >seq9 Length=21753712 Score = 167 bits (184), Expect = 3e-36 Identities = 392/584 (67%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 ||||| |||||||| || || || || || |||| || || ||||| || || || Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 24250 || |||||||||| || || ||||||||||||||||| | | || || |||||| || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCG-CACAGAAGCTTCCAGAGAA 19304035 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCA 24308 || |||||||| || ||||| |||| || | |||| | | | ||| | Sbjct 19304036 AAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGC--GAAGGATTCTGAACCG 19304093 Query 24309 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 | ||||| | ||||| || || |||||| | |||||||| || || || || || Sbjct 19304094 TCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGCG 19304153 Query 24369 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 | || | |||||| ||| ||||| | |||||| || | | || |||||| Sbjct 19304154 TGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATAC 19304213 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || || || || || ||||||||||| ||||| || ||||||||| | ||||| | Sbjct 19304214 ATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGCG 19304273 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 | || | || | || | | | || | |||||| || |||||||| ||| Sbjct 19304274 ACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGCG 19304333 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTC 24605 || || || || | | ||||| || || | || ||||| |||| || || | Sbjct 19304334 GCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTC-GGTG--AGAGAATCC 19304390 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 |||| | ||||| ||| | ||| |||||||| | ||||| ||||| || || || Sbjct 19304391 CAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCT 19304450 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || ||||| | |||||| | | | ||||| |||||||| || Sbjct 19304451 TTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACAT 19304494 >seq1 Length=36457581 Score = 105 bits (116), Expect = 8e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| |||| |||||||| || || || |||||| | | ||| | ||| | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | || ||| || || || || | ||| |||||||| || | || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||||||||||||||| | ||| | || | |||| || |||||| | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAAC-AACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAA 33689621 Query 54603 AAGTTTTAAAACCAAAATA 54621 ||||| |||||||| || Sbjct 33689622 GGGTTTTGAAACCAAAGTA 33689640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| |||||||| | || | || || | ||| | || | || |||||||| |||||| Sbjct 33689079 TCCACCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 33689138 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || || || || || |||||||||| || || || Sbjct 33689139 ATTGGATGTCCCATTAGTTCCACGAATGTAACTCCCTGTGGCACGAATGTTGTGAACAGA 33689198 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| |||| || || || || |||||||| || Sbjct 33689199 AACACCAATTCCTCCAGCTGATTTGCTGATTGCAGCACACTCCTTCAAAGTATCATATAT 33689258 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 33689259 TCCCTCTATACTATCATCTTTCAT 33689282 >seq2896 Length=25968 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | || || | ||| | || | || |||||||||||| || Sbjct 4779 TCCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCC 4720 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| ||||| || || || || ||||||||||||| || || Sbjct 4719 ATTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 4660 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || |||| ||| | || || ||| || || ||||| || Sbjct 4659 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATAT 4600 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||||||||||||||| ||||| Sbjct 4599 ACCCTCTATACTATCATCTTTCATG 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593620867709040