Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 9e-16 seq6 95.1 1e-14 seq4 93.3 4e-14 >seq19 Length=18159812 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| ||||| || ||| ||| ||| Sbjct 4557144 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATAACCCTAGAAGTTGAAAG 4557203 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | | || | || || || ||||||||||| || || ||| Sbjct 4557204 CAGTGACACAATCGACAATGTGAAAGCCAAGATCCAAGATAAAGAAGGAGTTCCACCAGA 4557263 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||||||| | | || || || || |||||||| |||||| | ||| | || ||||| Sbjct 4557264 TCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTAGCTGATTA 4557323 Query 29138 CAATATTCAGAAGGAATCTACTCTTCA 29164 ||||||||| ||||||||||||||||| Sbjct 4557324 CAATATTCAAAAGGAATCTACTCTTCA 4557350 >seq6 Length=33111450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| ||||| ||| || |||| | Sbjct 6668878 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCT 6668937 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || || ||||| || ||| | || ||||||| Sbjct 6668938 GACACCATTGACAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATTCCACCAGATCAA 6668997 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||| ||||| || || ||||| |||||| | ||| |||| ||||| || Sbjct 6668998 CAGAGGCTTATATTTGCTGGAAAGCAACTTGAAGATGGAAGGACTTTGGCAGATTATAAC 6669057 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| ||||||||||| |||| | || || | ||||| Sbjct 6669058 ATCCAGAAGGAGTCTACTCTTCATTTGGTACTGCGTTTGAGGGGAGG 6669104 >seq4 Length=27333975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || ||||||||||| ||| ||| ||| | Sbjct 24477389 AATGCAAATCTTCGTAAAAACCCTCACCGGCAAAACCATAACCCTAGAAGTGGAGAGTTC 24477448 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| || ||| ||||| ||||| | || |||||| Sbjct 24477449 CGACACCATCGACAACGTAAAGGCGAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 24477508 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||| | || || || || |||||||| |||||| | ||| | || ||||| || Sbjct 24477509 GCAGAGATTGATTTTCGCTGGAAAACAACTTGAAGATGGAAGAACCCTAGCTGATTATAA 24477568 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT-ACGATTACGAGGAGGG 29189 ||| ||||||||||| || |||||| | ||||| | | ||| | |||||| Sbjct 24477569 TATCCAGAAGGAATCAACACTTCACCTTGTGTTGAGGCTTA-GGGGAGGG 24477617 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || ||||| | ||| |||||| || || | |||||||| || || Sbjct 3994307 AAAATTCAGGACAAGGAAGGAATCCCCCCAGATCAGCAGAGGTTGATCTTTGCTGGTAAG 3994366 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||| | || | || || |||||||||||||||||||| || |||||| Sbjct 3994367 CAACTGGAAGATGGAAGGACCTTAGCTGACTACAATATTCAGAAGGAATCAACCCTTCAC 3994426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428265144257315