Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 8e-16 seq4 84.2 2e-11 >seq19 Length=18159812 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || ||| | ||||| | ||||| ||||| || ||| ||| ||| Sbjct 4557144 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATAACCCTAGAAGTTGAAAG 4557203 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | | || | || || || ||||||||||| || || ||| Sbjct 4557204 CAGTGACACAATCGACAATGTGAAAGCCAAGATCCAAGATAAAGAAGGAGTTCCACCAGA 4557263 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||| | | || || || || |||||| | |||||| | ||| | || ||||| Sbjct 4557264 TCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTAGCTGATTA 4557323 Query 25211 CAATATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||||||||||||||| Sbjct 4557324 CAATATTCAAAAGGAATCTACTCTTCA 4557350 >seq4 Length=27333975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || ||||||||||| ||| ||| ||| | Sbjct 24477389 AATGCAAATCTTCGTAAAAACCCTCACCGGCAAAACCATAACCCTAGAAGTGGAGAGTTC 24477448 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||| || ||| ||||| ||||| | || |||||| Sbjct 24477449 CGACACCATCGACAACGTAAAGGCGAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 24477508 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || ||| | || || || || |||||| | |||||| | ||| | || ||||| || Sbjct 24477509 GCAGAGATTGATTTTCGCTGGAAAACAACTTGAAGATGGAAGAACCCTAGCTGATTATAA 24477568 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT-ACGATTACGAGGAGGG 25262 ||| || |||||||| || |||||| | ||||| | | ||| | |||||| Sbjct 24477569 TATCCAGAAGGAATCAACACTTCACCTTGTGTTGAGGCTTA-GGGGAGGG 24477617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410728845608222