Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 131 3e-25 seq5 125 1e-23 seq19 123 4e-23 seq9 84.2 3e-11 >seq4 Length=27333975 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| || ||| | ||| | ||| | Sbjct 24477618 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAAACCATTACTTTGGAGGTGGAAAGTTCT 24477677 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | ||| || ||||| ||||| |||||||| ||||| ||||| Sbjct 24477678 GATACAATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 24477737 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || |||||||| ||| | | || || | ||||||||| Sbjct 24477738 CAGAGGTTGATTTTTGCAGGGAAGCAATTAGAAGATGGAAGGACTTTGGCTGATTATAAT 24477797 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || || ||| | || | ||| | ||| | || || || Sbjct 24477798 ATTCAGAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTGCGTGGGGG 24477844 Score = 107 bits (118), Expect = 3e-18 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| || || || |||||||| ||||| |||| | || || | Sbjct 24477389 AATGCAAATCTTCGTAAAAACCCTCACCGGCAAAACCATAACCCTAGA-AGTGGAG-AGT 24477446 Query 124598 T--GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | || || || || |||| ||| ||||||||||| ||||| || ||||| ||| Sbjct 24477447 TCCGACACCATCGACAACGTAAAGGCGAAGATTCAAGATAAGGAAGGAATTCCACCAGAT 24477506 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | ||||| || ||||||||| | || ||| | |||| ||| |||||| Sbjct 24477507 CAGCAGAGATTGATTTTCGCTGGAAAACAACTTGAAGATGGAAGAACCCTAGCTGATTAT 24477566 Query 124716 AATATTCAAAAAGAATCAAC 124735 ||||| || || |||||||| Sbjct 24477567 AATATCCAGAAGGAATCAAC 24477586 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || ||||| || || || || || ||||| | || ||| Sbjct 24477162 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTAGAGGTGGAGAGCTCC 24477221 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| || ||||| || || ||||| || |||||||| || Sbjct 24477222 -GACACAATCGATAACGTAAAAGCTAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 24477280 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || |||||||| ||||||| |||| || | | || || || Sbjct 24477281 GCAGCGTCTGATCTTCGCCGGAAAACAGCTAGAGGACGGTCGCACCCTCGCCGACTACAA 24477340 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||| || ||||||||||| | || | || | ||| | || || || || ||| || Sbjct 24477341 TATCCAGAAAGAATCAACCCTCCACCTCGTCCTCCGTCTCCGTGGAGGAATGCAAATCTT 24477400 Query 124777 CATAAAAA 124784 | |||||| Sbjct 24477401 CGTAAAAA 24477408 >seq5 Length=26376911 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || || || || | || | || ||| Sbjct 2894150 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTTGAAGTGGAGAGCTC- 2894092 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | || ||||||||||| ||||| || || ||||| || || Sbjct 2894091 TGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCA 2894032 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| || || ||| | |||||| |||| || |||| || ||||| Sbjct 2894031 ACAGAGGCTTATTTTTGCTGGCAAGCAACTCGAGGATGGTCGTACCTTAGCTGACTATAA 2893972 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| |||||| | || | || || ||| | || |||||||| Sbjct 2893971 CATCCAGAAAGAGTCAACTCTCCACCTTGTCTTGCGTCTCCGTGGTGGTAT 2893921 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || ||||| || || ||| | || |||| | Sbjct 2894606 ATGCAAATCTTTGTTAAGACACTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCT 2894547 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| |||| ||||||||||| || ||||| || ||||| || ||| Sbjct 2894546 GATACCATAGATAATGTAAAGGCTAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 2894487 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || || ||| | |||||| | || || | | ||||| || Sbjct 2894486 CAGCGTCTCATTTTTGCTGGCAAGCAACTTGAGGATGGGCGTACCCTTGCTGATTACAAC 2894427 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | |||||||| | ||| | || |||||||| Sbjct 2894426 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGTAT 2894377 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || || || || | || |||| Sbjct 2894378 ATGCAAATATTTGTCAAGACCTTGACCGGAAAGACCATCACACTTGAAGTTGAGAGTTCG 2894319 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || ||||||||||| ||||| || || ||||| || ||| Sbjct 2894318 GACACCATAGATAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCCGACCAA 2894259 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || | |||||| | || || |||| || || || Sbjct 2894258 CAGAGACTTATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACCTTAGCTGACTACAAC 2894199 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | ||||| || | ||| | || |||||||| Sbjct 2894198 ATCCAGAAGGAATCCACTCTCCATTTAGTGCTTCGTCTTCGTGGTGGTAT 2894149 >seq19 Length=18159812 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || ||||| ||||| |||| ||||| | Sbjct 4557147 AATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATAACCCTAGAAGTTGAAAGCAG 4557206 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || |||||||||||||| | ||||| ||||| Sbjct 4557207 TGACACAATCGACAATGTGAAAGCCAAGATCCAAGATAAAGAAGGAGTTCCACCAGATCA 4557266 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || |||||| | || ||| | |||| ||| ||||| || Sbjct 4557267 ACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTAGCTGATTACAA 4557326 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||||||| ||||| ||| | ||| | ||| | | | || ||||| |||| Sbjct 4557327 TATTCAAAAGGAATCTACTCTTCATCTTGTTCTTAGGCTCCGTGGTGGAATTA 4557379 >seq9 Length=21753712 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || || |||||||| || ||||| || |||||||| |||||||| || || || | || Sbjct 2446104 GACAAGGAAGGTATCCCTCCTGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAA 2446045 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||| | || || | | ||||||||||| ||||| ||||| || | |||||||| || Sbjct 2446044 GATGGACGCACTCTTGCCGATTATAATATACAAAAGGAATCCACACTTCATTTGGTCTT 2445986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755327827446400