Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16]
13,573 sequences; 609,203,021 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 7e-20
seq19 111 2e-19
seq9 98.7 1e-15
seq5 86.0 9e-12
seq9639 84.2 3e-11
>seq4
Length=27333975
Score = 113 bits (124), Expect = 7e-20
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || ||||| || || || | || | || ||||| || ||||||||||| |
Sbjct 24477616 CCTCCCCTAAGCCTCAACACAAGGTGAAGTGTTGATTCCTTCTGGATATTATAATCAGCT 24477557
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || | |||||||||||| ||||||||||| |||||||| || |||
Sbjct 24477556 AGGGTTCTTCCATCTTCAAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGA 24477497
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||| |||||||| || || ||||| || |||
Sbjct 24477496 ATTCCTTCCTTATCTTGAATCTTCGCCTTTACGTTGTCGATGGTGTCGGAACTCTCCACT 24477437
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
||||| || || ||||| || || | ||||| | ||| |||||||||
Sbjct 24477436 TCTAGGGTTATGGTTTTGCCGGTGAGGGTTTTTACGAAGATTTGCATT 24477389
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139
|||||| || || ||||||||||| | | ||| || | ||| |||||||| || ||
Sbjct 24477815 AGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGCTTCCC 24477756
Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 24477755 TGCAAAAATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTG 24477708
>seq19
Length=18159812
Score = 111 bits (122), Expect = 2e-19
Identities = 163/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107
||||||| | || || | || | ||| | ||||||||| ||| || ||||| |||||
Sbjct 4557376 TTCCACCACGGAGCCTAAGAACAAGATGAAGAGTAGATTCCTTTTGA-ATATTGTAATCA 4557318
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| || ||||| | ||| || | |||||| ||||| |||||||| | ||| ||||| ||
Sbjct 4557317 GCTAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 4557258
Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227
|||| ||||||||||||||| || || |||||
Sbjct 4557257 GGAACTCCTTCTTTATCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTTTCA 4557198
Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283
|||||||| || ||||||||||| |||| ||||| | ||| || |||||||| ||
Sbjct 4557197 ACTTCTAGGGTTATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 4557142
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| ||||| || || ||||| || | || ||||| || ||||||||||||
Sbjct 605667 GTTCCACCCCTAAGCCTCAAAACCAAGTGAAGCGTTGATTCCTTCTGTATATTATAATCA 605726
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||| | | ||| || || || || |||||||||||||| || ||||| |||||
Sbjct 605727 GCAAGAGTGCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGG 605786
Query 146168 GGAATTCCTTCTTTATC 146184
|| || || || || ||
Sbjct 605787 GGGATACCCTCCTTGTC 605803
>seq9
Length=21753712
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || ||||| || || |||||||| | || ||||| || ||||||||||||
Sbjct 2445968 GTTCCTCCCCTAAGCCTCAAGACCAAATGAAGTGTGGATTCCTTTTGTATATTATAATCG 2446027
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||| | | ||| || | || || ||||||||||||| |||||||| || |||
Sbjct 2446028 GCAAGAGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCAGGA 2446087
Query 146168 GGAATTCCTTCTTTATC 146184
|| || ||||| || ||
Sbjct 2446088 GGGATACCTTCCTTGTC 2446104
>seq5
Length=26376911
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|| || || ||||| || || ||||| || | || ||||| || |||||| |||||
Sbjct 20170920 GTCCCTCCCCTAAGCCTCAAGACCAAGTGAAGTGTGGATTCCTTTTGTATATTGTAATCA 20170979
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||| | || ||| || | || || |||||||||||||| || ||||| || |||
Sbjct 20170980 GCAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 20171039
Query 146168 GGAATTCCTTCTTTATC 146184
|| || || || || ||
Sbjct 20171040 GGGATACCCTCCTTGTC 20171056
>seq9639
Length=114074
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | ||| | ||| | ||| ||||| || ||||| ||||| |
Sbjct 59120 CCACCGCGAAGCCTGAGTACAAGATGAAGAGTGGATTCCTTTTGGATATTGTAATCAGCC 59061
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || || || |||||||| || ||||||| ||||||||||| |||
Sbjct 59060 AATGTTCTTCCATCCTCCAACTGCTTTCCAGCGAATATCAATCGCTGCTGATCCGGTGGA 59001
Query 146171 ATTCCTTCT 146179
|||||| ||
Sbjct 59000 ATTCCTGCT 58992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743400251452160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |