Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 113 7e-20 seq19 111 2e-19 seq9 98.7 1e-15 seq5 86.0 9e-12 seq9639 84.2 3e-11 >seq4 Length=27333975 Score = 113 bits (124), Expect = 7e-20 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || ||||| || || || | || | || ||||| || ||||||||||| | Sbjct 24477616 CCTCCCCTAAGCCTCAACACAAGGTGAAGTGTTGATTCCTTCTGGATATTATAATCAGCT 24477557 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | |||||||||||| ||||||||||| |||||||| || ||| Sbjct 24477556 AGGGTTCTTCCATCTTCAAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGA 24477497 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| || || ||||| || ||| Sbjct 24477496 ATTCCTTCCTTATCTTGAATCTTCGCCTTTACGTTGTCGATGGTGTCGGAACTCTCCACT 24477437 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || || ||||| || || | ||||| | ||| ||||||||| Sbjct 24477436 TCTAGGGTTATGGTTTTGCCGGTGAGGGTTTTTACGAAGATTTGCATT 24477389 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||| || || ||||||||||| | | ||| || | ||| |||||||| || || Sbjct 24477815 AGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGCTTCCC 24477756 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| || ||||||||||| ||||| ||||| ||||| || Sbjct 24477755 TGCAAAAATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTG 24477708 >seq19 Length=18159812 Score = 111 bits (122), Expect = 2e-19 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | || || | || | ||| | ||||||||| ||| || ||||| ||||| Sbjct 4557376 TTCCACCACGGAGCCTAAGAACAAGATGAAGAGTAGATTCCTTTTGA-ATATTGTAATCA 4557318 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||||| | ||| || | |||||| ||||| |||||||| | ||| ||||| || Sbjct 4557317 GCTAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 4557258 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 |||| ||||||||||||||| || || ||||| Sbjct 4557257 GGAACTCCTTCTTTATCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTTTCA 4557198 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||||||| || ||||||||||| |||| ||||| | ||| || |||||||| || Sbjct 4557197 ACTTCTAGGGTTATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 4557142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| || || ||||| || | || ||||| || |||||||||||| Sbjct 605667 GTTCCACCCCTAAGCCTCAAAACCAAGTGAAGCGTTGATTCCTTCTGTATATTATAATCA 605726 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || || || || |||||||||||||| || ||||| ||||| Sbjct 605727 GCAAGAGTGCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGG 605786 Query 146168 GGAATTCCTTCTTTATC 146184 || || || || || || Sbjct 605787 GGGATACCCTCCTTGTC 605803 >seq9 Length=21753712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||||||| | || ||||| || |||||||||||| Sbjct 2445968 GTTCCTCCCCTAAGCCTCAAGACCAAATGAAGTGTGGATTCCTTTTGTATATTATAATCG 2446027 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || | || || ||||||||||||| |||||||| || ||| Sbjct 2446028 GCAAGAGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCAGGA 2446087 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 2446088 GGGATACCTTCCTTGTC 2446104 >seq5 Length=26376911 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || ||||| || || ||||| || | || ||||| || |||||| ||||| Sbjct 20170920 GTCCCTCCCCTAAGCCTCAAGACCAAGTGAAGTGTGGATTCCTTTTGTATATTGTAATCA 20170979 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || | || || |||||||||||||| || ||||| || ||| Sbjct 20170980 GCAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 20171039 Query 146168 GGAATTCCTTCTTTATC 146184 || || || || || || Sbjct 20171040 GGGATACCCTCCTTGTC 20171056 >seq9639 Length=114074 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||| | ||| | ||| ||||| || ||||| ||||| | Sbjct 59120 CCACCGCGAAGCCTGAGTACAAGATGAAGAGTGGATTCCTTTTGGATATTGTAATCAGCC 59061 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || || || |||||||| || ||||||| ||||||||||| ||| Sbjct 59060 AATGTTCTTCCATCCTCCAACTGCTTTCCAGCGAATATCAATCGCTGCTGATCCGGTGGA 59001 Query 146171 ATTCCTTCT 146179 |||||| || Sbjct 59000 ATTCCTGCT 58992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743400251452160