Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq17 111 1e-19 seq3 111 1e-19 seq20 100 2e-16 seq6 91.5 1e-13 seq18 87.8 1e-12 seq4 84.2 1e-11 seq19 82.4 5e-11 >seq17 Length=21299880 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | ||| || || ||||| Sbjct 4985006 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAA 4984947 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 4984946 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 4984887 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| ||||| || || | ||||||||||| || || || |||||||| Sbjct 4984886 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 4984827 Query 34378 AAAGATCTGCATCG 34391 ||||||||||||| Sbjct 4984826 GAAGATCTGCATCG 4984813 >seq3 Length=30153019 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | ||| || || ||||| Sbjct 15142528 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAA 15142587 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 15142588 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 15142647 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| ||||| || || | ||||||||||| || || || |||||||| Sbjct 15142648 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 15142707 Query 34378 AAAGATCTGCATCG 34391 ||||||||||||| Sbjct 15142708 GAAGATCTGCATCG 15142721 >seq20 Length=21988590 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 4225089 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4225148 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| ||||| || ||||| ||||| ||||||||||| || Sbjct 4225149 AGGGTGCGACCGTCTTCCAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 4225208 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | || | ||||| || Sbjct 4225209 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTGTCTGAGGATTCAACC 4225268 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || ||||| || || || |||||||| |||||||||||| Sbjct 4225269 TCGAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATC 4225316 >seq6 Length=33111450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || ||| ||||| || ||||| |||| Sbjct 5099872 CCACCGCGGAGGCGGAGGACAAGGTGGAGGGTTGATTCCTTCTGGATATTGTAATCGGCG 5099813 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || ||||||||||| || Sbjct 5099812 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGG 5099753 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | || | || || || Sbjct 5099752 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 5099693 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || |||||||| || || || ||||||||||||||||||||| Sbjct 5099692 TCGAGGGTTATGGTTTTACCCGTTAGGGTTTTCACAAAGATCTGCATC 5099645 >seq18 Length=16588007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| || ||||| |||| Sbjct 12189667 CCACCGCGGAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGCG 12189726 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | || || || ||||| || | ||||||||||| || Sbjct 12189727 AGAGTGCGACCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 12189786 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | ||||| ||||| || Sbjct 12189787 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGATTCAACC 12189846 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAA 34397 || | || |||||||| || || || |||||||| ||||||||||||| ||||| Sbjct 12189847 TCGAGGGTAATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG-TCGAA 12189900 >seq4 Length=27333975 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 22406937 CCACCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 22406878 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||| || || ||||| ||||| || |||||||| || Sbjct 22406877 AGGGTGCGACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGTGGA 22406818 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | |||| ||||| || Sbjct 22406817 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATTGTGTCGGAAGATTCAACC 22406758 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | || || || || || || || |||||||| || |||||||||| Sbjct 22406757 TCAAGGGTTATCGTCTTACCCGTTAGGGTTTTCACGAAAATCTGCATCG 22406709 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || || |||||||||||||| | Sbjct 3993309 CCACCGCGAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGCA 3993250 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || | || || | ||||||||| || || ||||| || ||||| || | ||| Sbjct 3993249 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGATCCGGTGGG 3993190 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | || | |||| || || Sbjct 3993189 ATCCCT-TCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGGAACTCTCTAC 3993131 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| |||||||| ||||| |||||| Sbjct 3993130 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATC 3993082 >seq19 Length=18159812 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||| ||||| | |||| ||| ||||| ||||||||||| | Sbjct 4942028 CCACCACGAAGACGCAACACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCA 4941969 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || ||||||||||| || || || || | || ||||||||| || Sbjct 4941968 AGGGTCCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGG 4941909 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GAT---TC 34338 | | ||||||||| || ||| ||| | || |||||| ||| || || Sbjct 4941908 ATCCCCTCCTTGTCCTGGATTTTTGCCTTCACAT----TATCGATGGTGTCCGAACTCTC 4941853 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || || || || || || ||||| ||||||||||||||||| Sbjct 4941852 CACCTCCAATGTAATAGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 4941802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323018557126880