Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-38 seq11 170 2e-37 seq2 163 4e-35 seq1 111 2e-19 >seq9 Length=21753712 Score = 172 bits (190), Expect = 7e-38 Identities = 407/610 (67%), Gaps = 10/610 (2%) Strand=Plus/Plus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||||| |||||||| || || || || || |||| || || ||||| || || || Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || |||||||||| || || ||||||||||||||||| | | ||| ||| || || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAGAAA 19304036 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCAT 33756 || |||||||| || |||||| |||| || | ||| | | | ||| | | Sbjct 19304037 AATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGC--GAAGGATTCTGAACCGT 19304094 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| | ||||| || || |||||| | |||||||| || ||||| || || | Sbjct 19304095 CGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGCGT 19304154 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | |||||| ||| ||||| | ||| || |||| | || ||||||| Sbjct 19304155 GGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATACA 19304214 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || || || ||||||||||| || || || ||||||||| | ||||| | | Sbjct 19304215 TCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGCGA 19304274 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || | || || || | | | || | |||||| || ||||| || ||| | Sbjct 19304275 CTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGCGG 19304334 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || | | ||||| || || | || ||||| |||| || || || Sbjct 19304335 CGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTC-GGTG--AGAGAATCCC 19304391 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| | ||||| ||| | ||| |||||||| | ||||| ||||| || || || | Sbjct 19304392 AATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTT 19304451 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | |||||| | | | ||||||||||| || || || | || ||| | Sbjct 19304452 TCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACATGCAGAAACGATCTGGGT 19304511 Query 34174 TTGGTGCAAG 34183 |||| || || Sbjct 19304512 TTGGAGCCAG 19304521 >seq11 Length=35963958 Score = 170 bits (188), Expect = 2e-37 Identities = 406/612 (66%), Gaps = 4/612 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||| || || || || || |||| || || ||||| || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || ||||| ||||| || || | ||| |||||||| ||||| | | ||| ||| | Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | ||||| |||||||| || |||||| |||| ||| | ||| | | | ||| Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAG--GATTCTGA 2850564 Query 33754 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 ||| ||||| | ||||| || || ||| | |||||||| || ||||| | Sbjct 2850563 ACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAAC 2850504 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 || | || | | |||||| ||| ||| || | ||| || || | | ||||| Sbjct 2850503 CGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGACT 2850444 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||| || ||||| || |||||||| || || || |||||||||||| | ||||| Sbjct 2850443 GTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCTC 2850384 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | | || | ||| || ||| | | | || | |||||| || || || ||| Sbjct 2850383 AGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAGA 2850324 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||| || || || || | || ||||| | ||| | |||| | || || || | Sbjct 2850323 GGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCTC 2850264 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| | || || | ||| | ||| ||||| || | ||||| || ||||| || || Sbjct 2850263 CCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGGC 2850204 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 || |||||||| | |||||| | | | ||||| ||||| || || ||| | | ||| Sbjct 2850203 TTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGTCTGG 2850144 Query 34172 ATTTGGTGCAAG 34183 |||||| || || Sbjct 2850143 ATTTGGAGCCAG 2850132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | |||||||| || || || |||||| | | || | |||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 63723 TACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 || || | | ||| || ||||| |||| ||| |||||||| || | || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT-TATTTTCAACAAGTAGGATTTTTC 63838 ||||||||||||||||||||||||| |||| || | ||||| | |||||| | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAACAA-CTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 63839 CAAAGTTTTAAAACCAAAATA 63859 | ||||| |||||||| || Sbjct 31406265 AAGGGTTTTGAAACCAAAGTA 31406245 >seq2 Length=24697652 Score = 163 bits (180), Expect = 4e-35 Identities = 412/622 (66%), Gaps = 6/622 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||| ||||| | |||||| |||| ||||| ||||| || | Sbjct 21046905 ACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 21046964 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||| ||||| || || || | ||||||||| | | ||| ||| | Sbjct 21046965 AGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCAG 21047024 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | ||||| || ||||| || |||||| |||| || | || | | | ||| Sbjct 21047025 AGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAAG--GATTCTGA 21047082 Query 33754 CATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 || ||||| | ||||| || || || || || ||||| ||||| ||||| Sbjct 21047083 ACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTCTAT 21047142 Query 33812 GGCATTAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 || | || | || | ||||| ||| |||||| | ||| || || | | |||| Sbjct 21047143 TGCGTGGAATA-ATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAGAC 21047201 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||||| || ||||| || || || || || ||||| || |||||||| | |||| Sbjct 21047202 TATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGCCT 21047261 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | | | || | ||||| || | | | || | |||||| || ||||| || Sbjct 21047262 CAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTCGG 21047321 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 || || || || || | | ||||| || || | |||| | || || | Sbjct 21047322 AAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGT 21047381 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | || ||||| ||| | ||| |||||||| | ||||| ||||| || |||| Sbjct 21047382 CCCAGTGGCGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTG 21047441 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 34170 | ||||| ||||| | |||||| | | | |||||||||||||| || || | || | Sbjct 21047442 CTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAAACGATCAG 21047501 Query 34171 GATTTGGTGCAAGGATAGGTTC 34192 | ||||| ||||| | |||||| Sbjct 21047502 GGTTTGGAGCAAGAAGAGGTTC 21047523 >seq1 Length=36457581 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| |||| |||||||| || || || |||||| | | ||| | ||| | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | | ||| || || || || | ||| |||||||| || | || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||||||||||||||||| ||| | | ||||||| |||||| | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAACAACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAAG 33689622 Query 63842 AGTTTTAAAACCAAAATA 63859 ||||| |||||||| || Sbjct 33689623 GGTTTTGAAACCAAAGTA 33689640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629710743571440