Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16]
13,573 sequences; 609,203,021 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 109 5e-19
seq2896 86.0 6e-12
>seq9
Length=21753712
Score = 109 bits (120), Expect = 5e-19
Identities = 240/356 (67%), Gaps = 4/356 (1%)
Strand=Plus/Plus
Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685
|||||| || ||||||||||| | ||||| |||| ||| | || || || |||||
Sbjct 19303916 TAAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGT 19303975
Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745
| |||||||| || || |||||||| | ||||||||| ||| || ||||| ||
Sbjct 19303976 AAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAGAA 19304035
Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT-CCATATACCTTGTTGC-TA 11803
|||||||| || || ||||| || || | | |||| | | | || | |
Sbjct 19304036 AAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAGGATTCTGAACCGTC 19304095
Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863
| |||||| | ||||| |||||||||||| | || || || ||||| || |||
Sbjct 19304096 G--ATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGCG 19304153
Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923
| ||||| | |||| || ||| | | |||||| || | | | ||||||
Sbjct 19304154 TGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATAC 19304213
Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
|| || || || |||||||| || || ||||| || || |||||| || |||||
Sbjct 19304214 ATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 19304269
>seq2896
Length=25968
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 37171 TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGAT 37230
|| ||||| |||||||||||||| |||||||||||| | || || ||||||
Sbjct 6741 TAGATATTTGAAGTATATGGTTCAAAACACTCATTATTACCAAGAATCTGGCTAGTAGAT 6682
Query 37231 GCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTT 37290
||||||||||| || || | ||||| |||||||| |||| | | || ||||
Sbjct 6681 GCAGTAGGCATAGGGGCAACAAGAAGTGAATTTCTCACACCATTTTTTAATATCCTCTCC 6622
Query 37291 TTTAGTTCATTCCAATCCCA 37310
||||| |||||||||||||
Sbjct 6621 CTTAGTGCATTCCAATCCCA 6602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468445308911120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |