Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 187 3e-42 seq9 167 3e-36 seq1 105 9e-18 seq2896 104 3e-17 >seq11 Length=35963958 Score = 187 bits (206), Expect = 3e-42 Identities = 398/588 (68%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||| || || || || || |||| || || ||||| || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || ||||| ||||| || || | ||| |||||||| ||||| | | || | | | ||| Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAG-CACAGAAGCTTCCA 2850623 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || |||||||||||||| || ||||| |||| ||| | ||| | | | ||| Sbjct 2850622 GAGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAG--GATTCTG 2850565 Query 36329 T--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 ||| ||||| | ||||| || || ||| | |||||||| ||||| || | Sbjct 2850564 AACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAA 2850505 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 || | || | | |||||| ||| ||| || | |||||| |||| | |||| Sbjct 2850504 CCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGAC 2850445 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 | ||||| || ||||| || |||||||| || ||||| |||||||||||| | |||| Sbjct 2850444 TGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCT 2850385 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 | | | || | ||| || ||| | | | || | |||||| || || |||||| Sbjct 2850384 CAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAG 2850325 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGTTT 36624 ||| || || || || | || ||||| | ||| | |||| | |||| || || Sbjct 2850324 AGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTG--AGGTT 2850267 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| | || || | ||| | ||| ||||| || | ||||| || ||||| || Sbjct 2850266 CTCCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTC 2850207 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || |||||||| | |||||| | | | |||||||||||||| || Sbjct 2850206 GGCTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACAT 2850159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | |||||||| || || || |||||| | | || | |||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 66516 TACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 || || | | ||| || ||||| |||| ||| |||||||| || | || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTC 66631 ||||||||||||||||||||||| | ||||| || | ||||| | |||||| | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAAC-AACTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 66632 CAAAGTTTTAAAACCAAAATA 66652 | ||||| |||||||| || Sbjct 31406265 AAGGGTTTTGAAACCAAAGTA 31406245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | ||| || | |||| |||| | || |||||||| |||||| Sbjct 31406825 TCCACCTTGATCAACATAGCGAGCAGTATCATTAAAAACACGCAGCATTGGAACAATACC 31406766 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || ||| || || || | || || || || || || Sbjct 31406765 ATTGGATGTCCCATTAGTTCCCCGGATGTAACTGCCTGTGGCTCGGATGTTGTGAACAGA 31406706 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| || || || || |||||||| || Sbjct 31406705 AACACCAATTCCTCCAGCTGATTTGCTGATCGCAGCACACTCCTTCAAAGTATCATATAT 31406646 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 31406645 TCCCTCTATACTATCATCTTTCAT 31406622 >seq9 Length=21753712 Score = 167 bits (184), Expect = 3e-36 Identities = 391/584 (67%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 ||||| |||||||| || || || || || |||| || || ||||| || || || Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 36273 || |||||||||| || || ||||||||||||||||| | | || || |||||| || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCG-CACAGAAGCTTCCAGAGAA 19304035 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCACTGTC 36330 || |||||||| || ||||| |||| || | ||| | | | | || ||| Sbjct 19304036 AAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAGGATTCTGAACCGTC 19304095 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 ||||| | ||||| || || |||||| | |||||||| || || || || || Sbjct 19304096 ---GATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGC 19304152 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | || | |||||| ||| ||||| | |||||| || | | || ||||| Sbjct 19304153 GTGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATA 19304212 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || || || || ||||||||||| ||||| || ||||||||| | ||||| | Sbjct 19304213 CATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGC 19304272 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 | || | || || || | | | || | |||||| || |||||||| ||| Sbjct 19304273 GACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGC 19304332 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTTTATTC 36628 || || || || | | ||||| || || | ||| | | |||| || || | Sbjct 19304333 GGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTG--AGAGAATCC 19304390 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 |||| | ||||| ||| | ||| |||||||| | ||||| ||||| || || || Sbjct 19304391 CAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCT 19304450 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || ||||| | |||||| | | | ||||| |||||||| || Sbjct 19304451 TTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACAT 19304494 >seq1 Length=36457581 Score = 105 bits (116), Expect = 9e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| |||| |||||||| || || || |||||| | | ||| | ||| | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | | ||| || || || || | ||| |||||||| || | || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||||||||||||||| | ||| | || | ||||||| |||||| | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAAC-AACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAA 33689621 Query 66634 AAGTTTTAAAACCAAAATA 66652 ||||| |||||||| || Sbjct 33689622 GGGTTTTGAAACCAAAGTA 33689640 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| |||||||| | || | || || | ||| | || | || |||||||| |||||| Sbjct 33689079 TCCACCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 33689138 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || || || || || | |||||||| || || || Sbjct 33689139 ATTGGATGTCCCATTAGTTCCACGAATGTAACTCCCTGTGGCACGAATGTTGTGAACAGA 33689198 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| |||| || || || || |||||||| || Sbjct 33689199 AACACCAATTCCTCCAGCTGATTTGCTGATTGCAGCACACTCCTTCAAAGTATCATATAT 33689258 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 33689259 TCCCTCTATACTATCATCTTTCAT 33689282 >seq2896 Length=25968 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | || || | ||| | || | || |||||||||||| || Sbjct 4779 TCCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCC 4720 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| ||||| || || || || | ||||||||||| || || Sbjct 4719 ATTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 4660 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || |||| ||| | || || ||| || || ||||| || Sbjct 4659 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATAT 4600 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||||||||||||||| ||||| Sbjct 4599 ACCCTCTATACTATCATCTTTCATG 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658061132757320