Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19 125 7e-24 seq4 95.1 1e-14 seq5 86.0 6e-12 >seq19 Length=18159812 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || ||||| || || |||||||||||| | Sbjct 4941116 CCACCACGGAGACGCAAGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTATAATCGGCC 4941057 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| ||| || ||||| || |||||| |||| || | ||||||||||| | Sbjct 4941056 AAAGT--TCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCGGGTG 4940999 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| ||| ||| ||| | | || | ||||||| ||||| Sbjct 4940998 GGATACCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTCTCCA 4940939 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| |||||||| || || || || ||||||||| Sbjct 4940938 CCTCAAGGGTGATGGTCTTTCCGGTCAAGGTCTTAACAAAGATTTGCATA 4940889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | || ||||| || || ||||||||||| | Sbjct 4941572 CCACCACGGAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 4941513 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| || || ||||| || |||||| |||| || | |||||||| || | Sbjct 4941512 AAAGT--TCGACCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGTG 4941455 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| ||| ||| ||| | | || | ||||| | ||||| Sbjct 4941454 GAATACCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAACTCTCCA 4941395 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| || ||||| || || || || ||||||||| Sbjct 4941394 CCTCAAGGGTGATTGTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCATA 4941345 >seq4 Length=27333975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||||||||||||| || Sbjct 22406907 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCGAGCTGTTTTCCG 22406848 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || |||||||| || || || || ||||| ||||| ||| || || Sbjct 22406847 GCGAAGATGAGGCGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTC 22406788 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | || ||||||| ||| | |||||| || || | ||| Sbjct 22406787 ACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTTATCGTCTTACCCGTTAGGGTT 22406728 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 22406727 TTCACGAAAATCTGCAT 22406711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| ||||| ||||| || || Sbjct 3993310 GCCACCGCGAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGC 3993251 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || || ||| |||| |||||||||||||| || || Sbjct 3993250 AAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGATCCGGTGG 3993191 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 3993190 GATCCCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGGAACTCTCTAC 3993131 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | ||||| ||||| |||||||| Sbjct 3993130 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 3993083 >seq5 Length=26376911 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| ||||| | ||||| || ||||| ||||||||||| || || Sbjct 2893468 CCTCCACGAAGACGTAAAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 2893527 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||| || |||||| |||||| | ||||| || || || Sbjct 2893528 AGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 2893587 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||||||| ||| | | || | |||||| | || ||| Sbjct 2893588 ATCCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATTGTGTCCGAACTTTCAACC 2893647 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| |||||||| || || || || |||||||| Sbjct 2893648 TCCAAAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATTTGCAT 2893694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495979836541600