Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 168 1e-36 seq9 168 1e-36 seq2 158 2e-33 seq1 105 1e-17 seq2896 104 3e-17 >seq11 Length=35963958 Score = 168 bits (186), Expect = 1e-36 Identities = 408/613 (67%), Gaps = 6/613 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||| || || || || || |||| || | ||||| || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070 | || ||||| ||||| || || | ||| |||||||| ||||| | | || | | ||| Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAG-CACAGAAGCTTCCA 2850623 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| |||||||| || ||||| |||||||| | ||| | | | ||| Sbjct 2850622 GAGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAG--GATTCTG 2850565 Query 50131 T--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 ||| ||||| | ||||| || || ||| | |||||||| || ||||| | Sbjct 2850564 AACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAA 2850505 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 || | || | | |||||| ||| ||| || | ||| || || | | |||| Sbjct 2850504 CCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGAC 2850445 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || ||||| || |||||||| || || || |||||||||||| | |||| Sbjct 2850444 TGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCT 2850385 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | | | || | ||| || ||| | | | || | |||||| || || |||||| Sbjct 2850384 CAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAG 2850325 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || || | || ||||| | ||| || |||| | || || || | Sbjct 2850324 AGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCT 2850265 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | || || | ||| | ||| ||||| || | ||||| || ||||| || | Sbjct 2850264 CCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGG 2850205 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 | || |||||||| | |||||| | | | ||||| ||||| || || ||| | | || Sbjct 2850204 CTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGTCTG 2850145 Query 50549 GATTTGGTGCAAG 50561 ||||||| || || Sbjct 2850144 GATTTGGAGCCAG 2850132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | |||||||| || || || |||||| | | |||| |||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 80395 TACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 || || | | ||| || ||||| |||| ||| |||||||| || | || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTC 80510 ||||||||||||||||||||||| | ||||| || | ||||| | ||| || | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAAC-AACTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 80511 CAAAGTTTTAAAACCAAAATA 80531 | ||||| |||||||| || Sbjct 31406265 AAGGGTTTTGAAACCAAAGTA 31406245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | |||| |||| | || |||||||| |||||| Sbjct 31406825 TCCACCTTGATCAACATAGCGAGCAGTATCATTAAAAACACGCAGCATTGGAACAATACC 31406766 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||| || || || |||| || || || || || Sbjct 31406765 ATTGGATGTCCCATTAGTTCCCCGGATGTAACTGCCTGTGGCTCGGATGTTGTGAACAGA 31406706 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| || || || || |||||||| || Sbjct 31406705 AACACCAATTCCTCCAGCTGATTTGCTGATCGCAGCACACTCCTTCAAAGTATCATATAT 31406646 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 |||||||| |||||||| |||| Sbjct 31406645 TCCCTCTATACTATCATCTTTCAT 31406622 >seq9 Length=21753712 Score = 168 bits (186), Expect = 1e-36 Identities = 405/608 (67%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 ||||| |||||||| || || || || || |||| || | ||||| || || || Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAA 50075 || |||||||||| || || ||||||||||||||||| | | || | | ||||| || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCG-CACAGAAGCTTCCAGAGAA 19304035 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG 50135 || |||||||| || ||||| ||||| || | ||| | | | ||| | Sbjct 19304036 AAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAG--GATTCTGAACCG 19304093 Query 50136 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | ||||| | ||||| || || |||||| | |||||||| || ||||| || || Sbjct 19304094 TCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGCG 19304153 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 | || | |||||| ||| ||||| | ||| || |||| | || |||||| Sbjct 19304154 TGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATAC 19304213 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || || || || ||||||||||| || || || ||||||||| | ||||| | Sbjct 19304214 ATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGCG 19304273 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | || | || || || | | | || | |||||| || |||||||| ||| Sbjct 19304274 ACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGCG 19304333 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || || || || | | ||||| || || || ||| | | || || || |||| Sbjct 19304334 GCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGAGAGAATCCCAA 19304393 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | | ||||| ||| | ||| |||||||| | ||||| ||||| || || || || Sbjct 19304394 TGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTC 19304453 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | |||||| | | | ||||||||||| || || || | || ||| ||| Sbjct 19304454 TTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACATGCAGAAACGATCTGGGTTT 19304513 Query 50554 GGTGCAAG 50561 || || || Sbjct 19304514 GGAGCCAG 19304521 >seq2 Length=24697652 Score = 158 bits (174), Expect = 2e-33 Identities = 413/623 (66%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||| ||||| | |||||| |||| |||| ||||| || | Sbjct 21046905 ACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 21046964 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070 | || || || ||||| ||||| || || || | ||||||||| | | || | | ||| Sbjct 21046965 AGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCG-CACAGAAGCTTCCA 21047023 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || ||||| || ||||| ||||| || | || | | | ||| Sbjct 21047024 GAGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAAG--GATTCTG 21047081 Query 50131 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || ||||| | ||||| || || || || || ||||| ||||| |||| Sbjct 21047082 AACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTCTA 21047141 Query 50189 TGGCATTAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | || | || | || | ||||| ||| |||||| | ||| || || | | ||| Sbjct 21047142 TTGCGTGGAATA-ATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAGA 21047200 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||||||| || ||||| || || || || || ||||| || |||||||| | ||| Sbjct 21047201 CTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGCC 21047260 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | | || | ||||| || | | | || | |||||| || |||||||| Sbjct 21047261 TCAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTCG 21047320 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || || || || || | | ||||| || || || |||| | || || Sbjct 21047321 GAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAG 21047380 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | || ||||| ||| | ||| |||||||| | ||||| ||||| || ||| Sbjct 21047381 TCCCAGTGGCGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCT 21047440 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 50547 || ||||| ||||| | |||||| | | | |||||||||||||| || || | || Sbjct 21047441 GCTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAAACGATCA 21047500 Query 50548 GGATTTGGTGCAAGGATCGGTTC 50570 || ||||| ||||| | ||||| Sbjct 21047501 GGGTTTGGAGCAAGAAGAGGTTC 21047523 >seq1 Length=36457581 Score = 105 bits (116), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| |||| |||||||| || || || |||||| | | ||||| ||| | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | | ||| || || || || | ||| |||||||| || | || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||||||||||||||| | ||| | || | ||||||| ||| || | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAAC-AACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAA 33689621 Query 80513 AAGTTTTAAAACCAAAATA 80531 ||||| |||||||| || Sbjct 33689622 GGGTTTTGAAACCAAAGTA 33689640 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||| | || | || || | ||| | || | || |||||||| |||||| Sbjct 33689079 TCCACCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 33689138 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || || || || || |||||||||| || || || Sbjct 33689139 ATTGGATGTCCCATTAGTTCCACGAATGTAACTCCCTGTGGCACGAATGTTGTGAACAGA 33689198 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| |||| || || || || |||||||| || Sbjct 33689199 AACACCAATTCCTCCAGCTGATTTGCTGATTGCAGCACACTCCTTCAAAGTATCATATAT 33689258 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 |||||||| |||||||| |||| Sbjct 33689259 TCCCTCTATACTATCATCTTTCAT 33689282 >seq2896 Length=25968 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | || || | ||| | || | || |||||||||||| || Sbjct 4779 TCCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCC 4720 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| ||||| || || || || ||||||||||||| || || Sbjct 4719 ATTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 4660 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || |||| ||| | || || ||| || || ||||| || Sbjct 4659 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATAT 4600 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||||| |||||||| ||||| Sbjct 4599 ACCCTCTATACTATCATCTTTCATG 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718146936719720