Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 6e-12 seq5 86.0 6e-12 seq12525 84.2 2e-11 >seq19 Length=18159812 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTT 143033 ||| | ||||| |||||||| ||||| || |||||||| ||| | || || |||| Sbjct 4557357 AACAAGATGAAGAGTAGATTCCTTTTGAATATTGTAATCAGCT-AGGGTTCTTCCATCTT 4557299 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | |||||||||||||| | |||| |||||| ||||| || || | |||||||| || Sbjct 4557298 CAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAACTCCTTCTTTATCTT 4557239 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 || || ||| | | || | ||||| || ||| ||||| | || | || | Sbjct 4557238 GGATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTTTCAACTTCTAGGGTTATTGTTT 4557179 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || | ||||| ||||| || ||||| Sbjct 4557178 TACCCGTTAGGGTTTTCACGAAGATCTGCAT 4557148 >seq5 Length=26376911 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | |||||||| | || ||||| || || |||||||| || ||| Sbjct 2894152 CCACCACGAAGACGAAGCACTAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCT 2894211 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || || || || || |||||| |||| || | || || ||||| || Sbjct 2894212 AAG-GTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGTCTCTGTTGGTCGGGTGG 2894270 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| |||||| || | | || | ||||||| || || Sbjct 2894271 GATGCCCTCTTTGTCTTGAATTTTGGCCTTCACATTATCTATGGTGTCCGAACTCTCAAC 2894330 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | ||||| |||||||| || || || |||||||||||| Sbjct 2894331 TTCAAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAATATTTGCATA 2894379 >seq12525 Length=279716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||| | ||| | ||||| || || || || || |||||||| || | |||| Sbjct 230464 ACGAAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCC 230405 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||||| |||||||||||| ||||||| | ||||| || ||||| |||||||| || Sbjct 230404 ATCTTCGAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTT 230345 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || || | | || | ||||| | | |||||| |||| ||| | Sbjct 230344 GTCCTGGATCTTCGCCTTGACATTATCAATGGTGTCAGAGCTTTCTACCTCAAGAGTGAT 230285 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | || || || || || ||||| Sbjct 230284 TGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 230249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506928378669360