Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq19 129 4e-25 seq18 123 2e-23 seq5 116 3e-21 seq4 109 4e-19 seq6 91.5 1e-13 seq12525 86.0 5e-12 >seq19 Length=18159812 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| || |||||||| ||| |||| | ||||| Sbjct 4557357 AACAAGATGAAGAGTAGATTCCTTTTGAATATTGTAATCAGCTAGGGTTCTTCCATCTTC 4557298 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| |||||| | |||||||||||||| || ||||| ||||||||| || Sbjct 4557297 AAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAACTCCTTCTTTATCTTG 4557238 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || ||| | || || || || || |||| || |||| ||| || ||||| Sbjct 4557237 GATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTTTCAACTTCTAGGGTTATTGTTTT 4557178 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| || || ||||| || || || ||||| ||| Sbjct 4557177 ACCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 4557144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| || ||||| ||||| || || ||| | | | | || || Sbjct 4941326 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTATAGTCTGCTAGGGTACGCCCATCCTCA 4941267 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | ||| || ||||| || || ||||| || || Sbjct 4941266 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 4941207 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || || || | | ||||| || || || || || || Sbjct 4941206 ATCTTGGCCTTCACATTGTCGATTGTGTCCGAACTCTCTACCTCCAAAGTGATTGTCTTG 4941147 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || |||||||| |||||| Sbjct 4941146 CCAGTAAGAGTCTTCACAAAAATCTGCATA 4941117 >seq18 Length=16588007 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || || ||||||||| ||| | | ||||||| | |||| Sbjct 12189691 TGGAGGGTCGACTCCTTCTGAATATTGTAATCGGCGAGAGTGCGACCGTCTTCGAGTTGT 12189750 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||||||| || ||||| |||||||||||| ||||| || ||| Sbjct 12189751 TTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTG 12189810 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||||||| ||| || || | ||||||||||||||| || Sbjct 12189811 GCCTTGACATTGTCGATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTTTTACCCGTT 12189870 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || ||||| || || || ||||| | |||| Sbjct 12189871 AGGGTTTTCACGAAGATCTGCATCGTCGAAA 12189901 >seq5 Length=26376911 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || ||||| ||||||||||| || | | | | || || Sbjct 2894398 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCA 2894457 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | || | ||| |||||||| ||| || ||||| ||||| | Sbjct 2894458 AGTTGCTTGCCAGCAAAAATGAGACGCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 2894517 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||||||| | ||||||||||| | | || || || | || ||||| || Sbjct 2894518 ATTTTAGCCTTTACATTATCTATGGTATCAGAACTCTCAACTTCGAGAGTGATGGTCTTG 2894577 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 2894578 CCAGTGAGTGTCTTAACAAAGATTTGCAT 2894606 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || || ||||||||| || | | ||||||| | |||| Sbjct 15676341 TGGAGGGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCTTCGAGTTGT 15676282 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||||| | || |||||| | ||||||||||| ||||| || ||| Sbjct 15676281 TTTCCGGCGAAGATCAAATGCTGCTGGTCGGT-GGAATTCCTTCCTTGTCTTGGATCTTG 15676223 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||||| | ||| || || | ||| ||||||||||| || Sbjct 15676222 GCCTTGACATTGTCGATGGTATGGGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTT 15676163 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || | ||| ||||| || ||||| | |||| Sbjct 15676162 AG-GGTTTCACAAAGATCTGCATCGTCGAAA 15676133 >seq4 Length=27333975 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || || || ||||| ||| |||| | ||||| | |||| Sbjct 24477592 TGAAGTGTTGATTCCTTCTGGATATTATAATCAGCTAGGGTTCTTCCATCTTCAAGTTGT 24477533 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | || || || |||||||||||| || || ||| || Sbjct 24477532 TTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTC 24477473 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| | || ||||| ||| | | || || |||| ||| |||||||| || || Sbjct 24477472 GCCTTTACGTTGTCGATGGTGTCGGAACTCTCCACTTCTAGGGTTATGGTTTTGCCGGTG 24477413 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || |||||||| Sbjct 24477412 AGGGTTTTTACGAAGATTTGCAT 24477390 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||| || || || || || ||||| || ||| || | || | ||||| | ||| Sbjct 3994425 TGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCTAAGG-TCCTTCCATCTTCCAGTTG 3994367 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || || |||||||| ||||| |||||| Sbjct 3994366 CTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGAATTTT 3994307 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||||||| | | || || || | |||||||| || || || Sbjct 3994306 GGCCTTCACATTATCAATGGTATCGGAACTCTCAACCTCAAGAGTAATGGTCTTCCCAGT 3994247 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 3994246 CAAGGTCTTCACAAAAATTTGCAT 3994223 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| ||| || | | ||||||| | ||| Sbjct 22406913 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCGAGCTGT 22406854 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | ||||| ||||| |||||||||||| ||||| || ||| Sbjct 22406853 TTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTG 22406794 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | ||| || || | ||| || || ||||| || Sbjct 22406793 GCCTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTTATCGTCTTACCCGTT 22406734 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||| ||||| Sbjct 22406733 AGGGTTTTCACGAAAATCTGCAT 22406711 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || ||||| || || ||||| ||| || | | |||| |||| ||| Sbjct 24477364 TGGAGGGTTGATTCTTTCTGGATATTGTAGTCGGCGAGGGTGCGACCGTCCTCTAGCTGT 24477305 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | |||| ||| || ||||| |||||||||||| ||||| ||| || Sbjct 24477304 TTTCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTA 24477245 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||||| | || || || ||| | || || |||| ||| ||||| || || || Sbjct 24477244 GCT-TTTACGTTATCGATTGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGT 24477186 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || |||||||| Sbjct 24477185 TAGGGTTTTCACGAAGATTTGCAT 24477162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || || || ||||| | | | || | ||||||||||| Sbjct 24477820 TGAAGAGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGC 24477761 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || || || | ||||| | || || || |||||| ||||| || || ||| || Sbjct 24477760 TTCCCTGCAAAAATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTA 24477701 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | |||| || || || ||||||||||| || || Sbjct 24477700 GCT-TTCACATTATCAATTGTATCAGAACTTTCCACCTCCAAAGTAATGGTTTTCCCAGT 24477642 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||| || |||||||| ||||| Sbjct 24477641 CAAAGTCTTCACAAAAATCTGCAT 24477618 >seq6 Length=33111450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || || ||||||||| || | | |||| || | ||| Sbjct 5099848 TGGAGGGTTGATTCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCGTCCTCAAGTTGC 5099789 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| || || ||||| ||| |||||||| ||||| || ||| Sbjct 5099788 TTTCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTG 5099729 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || || | ||| ||||||||||| || Sbjct 5099728 GCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCGAGGGTTATGGTTTTACCCGTT 5099669 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || ||||| ||||| || ||||| || |||||| Sbjct 5099668 AGGGTTTTCACAAAGATCTGCATCTTCGAAAAT 5099636 >seq12525 Length=279716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || || | || | ||||| | || Sbjct 230679 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCTTCAAGCTGC 230620 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | |||||||| || |||||||| || || ||| ||| Sbjct 230619 TTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCCTTATCCTGAATCTTT 230560 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || ||||| | | || || || | ||||| ||||| || || Sbjct 230559 GC-CTTCACATTATCAATAGTATCCGAACTCTCAACCTCAAGAGTAATAGTTTTCCCAGT 230501 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 230500 CAAGGTCTTCACAAAAATCTGCAT 230477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362119287977193