Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq5 82.4 6e-11 seq4 82.4 6e-11 >seq5 Length=26376911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || ||||| || ||||| || || | | || | ||| || | ||| Sbjct 2893948 TGGAGAGTTGACTCTTTCTGGATGTTATAGTCAGCTAAGGTACGACCATCCTCGAGTTGC 2894007 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| |||||||||||||||| || || | ||| |||||||| |||||| Sbjct 2894008 TTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGAATTTTG 2894067 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||||| | | ||| | || || | ||| ||| | || ||||| || ||||| Sbjct 2894068 GCCTTCACATTGTCAATTGTGTC-AGAGCTCTCCACTTCAAGTGTGATGGTCTTTCCGGT 2894126 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || |||||||| |||||||| Sbjct 2894127 CAAGGTCTTGACAAAGATTTGCAT 2894150 >seq4 Length=27333975 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || || || || || ||||| ||| ||| | |||||| ||||| Sbjct 24477820 TGAAGAGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGC 24477761 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | |||||| ||||| || | ||||| || || ||| || Sbjct 24477760 TTCCCTGCAAAAATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTA 24477701 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | |||| |||| ||||||||||| || ||| Sbjct 24477700 GCTTTCACATTATCAATTGTATCAGAACTTTCCACCTCCAAAGTAATGGTTTTCCCAGTC 24477641 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || || |||||||| ||||| Sbjct 24477640 AAAGTCTTCACAAAAATCTGCAT 24477618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419517791492013