Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9 170 2e-37 seq2 111 1e-19 seq11 96.9 3e-15 >seq9 Length=21753712 Score = 170 bits (188), Expect = 2e-37 Identities = 566/863 (66%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||||||||||| | ||| || || ||||| || || || || ||| Sbjct 19303614 GACATAACAGAAGCCTTTTGATATTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCT 19303673 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| |||||| |||| ||||| || | | ||| || |||| Sbjct 19303674 TGAAGCGAAATCAGTTCCATCCAATCAAAAGGGTTCTGCACTTCATACACCTTCCCACAC 19303733 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | || || || || |||||||||||||| ||||| |||| ||| | | Sbjct 19303734 CCAAGCGCACCCAATAACCTATCCGCAACAAACTCTATATACTGACTCATCAAAACCCCA 19303793 Query 13025 TTCATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 |||||||| | || ||| || | || || | ||| | | | || || || || Sbjct 19303794 TTCATTCCCACCAACGC-ACATGGAAGCGCGTCACACACAAACTCTCTCTCGATCTCCAC 19303852 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-----TGAT-AGATG 13137 ||| || ||| || || ||| ||| || || |||| | || | || ||| | Sbjct 19303853 TGCGTCACGAACAAT-TCCCTTCACACGCTC-CTC-TGGAAGCTTCTTCTTCATTAGA-G 19303908 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 || | || | ||| || |||||||| || | |||||||||| ||| | |||||| Sbjct 19303909 AGTATA-ATAA-ACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTT 19303966 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 || ||||| ||||| ||||| | ||| |||||||||| ||||||||| ||| || Sbjct 19303967 CGAGAATGTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCT 19304026 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || || ||||||||||||||||| ||||| || | | | ||| | || | Sbjct 19304027 TCCAGAGAAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTC----TGCGAAGG 19304082 Query 13318 ATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 ||| | || || ||||| | ||||| | ||||| | | |||| || || Sbjct 19304083 ATTCTGAACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGG 19304142 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 |||| || |||| ||||| ||||| || |||| ||||| || || | | Sbjct 19304143 TTTCAATCGCGTGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAA 19304202 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | ||||||||| || || || |||||||| || || |||||||| || || ||| | Sbjct 19304203 GGAGGCTATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCAC 19304262 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAA--AATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 ||||| | || |||| || |||| | || ||| | || | |||||| ||| || Sbjct 19304263 GCGCCTCAGCGACTTGAATTT--GAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGAT 19304320 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--T 13612 ||||| || || || || || || ||||| || || || | ||| | || | Sbjct 19304321 TCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGT 19304380 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 || | | ||||| ||| ||||| || | ||| || || || ||||||| || Sbjct 19304381 GAGAGAAT--CCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAAT 19304438 Query 13673 GAAGCAACAGCCTTCTTATACAT 13695 ||||| | || ||||| ||||| Sbjct 19304439 GAAGCTTCGGCTTTCTTGTACAT 19304461 >seq2 Length=24697652 Score = 111 bits (122), Expect = 1e-19 Identities = 482/756 (64%), Gaps = 11/756 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| || ||||| | ||| || || ||||| || || || || || Sbjct 21046607 GACATAACAGAAGCTTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTAGTCTTCCCC 21046666 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| |||||| |||| ||||| |||| | | ||| || |||| Sbjct 21046667 TGAAGCGAAATCAATTCCATCCAATCAAAAGGGTTTTGCACATCATACACCTTCCCACAC 21046726 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | || || || ||||| || ||||| || || || |||| ||| | | Sbjct 21046727 CCAAGCGCACCCAATAACCTATCAGCTACGAACTCAATATATTGACTCATCAAACCCCCA 21046786 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || | || || | || || | ||| | | ||||| ||||| Sbjct 21046787 TTCATCCCCACCAACGCGCATGGAAGCGCGTCACACACAAACTCCCTCTCTATTTCAACC 21046846 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGATAGATGCTTAA- 13142 || || || || | ||| ||| |||| |||| | || | || || | Sbjct 21046847 GCATCACGCACAATCCC-CTTC--ACGCGCTCTTCTGGAAGCTTCTTATTCATTAGAGAG 21046903 Query 13143 -ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||| || || || ||||||||||| || || ||||||| |||| ||||||||| Sbjct 21046904 TACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAG 21046963 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || ||||| |||||||| |||||||| || | ||||||||| ||| || || Sbjct 21046964 AAGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCA 21047023 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT- 13320 || || || || |||||||| |||||||| | | | |||| || | ||| Sbjct 21047024 GAGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCA----GCGAAGGATTC 21047079 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 | || || ||||| ||||| | ||||||| |||||| || | || Sbjct 21047080 TGAACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTC 21047139 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 |||||||| ||||| |||||| || ||| ||||| || || | | | Sbjct 21047140 TATTGCGTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAG 21047199 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 |||||||| || ||||| ||||| || || || || ||||| || || || | || Sbjct 21047200 ACTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGC 21047259 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||| | || || | || | || ||| | || | |||||| || || ||||| Sbjct 21047260 CTCAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTC 21047319 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 ||| || || ||||| || ||||| || || || Sbjct 21047320 GGAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAA 21047355 >seq11 Length=35963958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 360/563 (64%), Gaps = 5/563 (1%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || |||||||| || | |||||||||| ||| | ||||||||| | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 | || || || |||||||| |||| || |||| ||| ||||||||| || || | Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622 Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT-T 13321 | || || ||||||||||| |||||||| | | | ||| || | ||| | Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCA----GCGAAGGATTCT 2850566 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || || ||||| | ||||| | ||||| ||| || || |||| Sbjct 2850565 GAACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCA 2850506 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | |||| || ||| ||||| || || ||||| || || | | | Sbjct 2850505 ACCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGA 2850446 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 || ||||| || ||||| |||||||| || || |||||||| || || ||| | ||| Sbjct 2850445 CTGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCC 2850386 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | || || | ||| | ||| ||| | || | |||||| ||| || |||||| Sbjct 2850385 TCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCA 2850326 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621 || || || ||||| || | ||| || | ||| | |||| || | | || Sbjct 2850325 GAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTC 2850266 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 ||| | | | || | || | ||| || ||||| ||||||| ||||| || | Sbjct 2850265 TCCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCG 2850206 Query 13682 GCCTTCTTATACATCATCCATAT 13704 || |||||||||||| ||| || Sbjct 2850205 GCTTTCTTATACATCTCCCAGAT 2850183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430911106487346