Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16]
13,573 sequences; 609,203,021 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq9 170 2e-37
seq2 111 1e-19
seq11 96.9 3e-15
>seq9
Length=21753712
Score = 170 bits (188), Expect = 2e-37
Identities = 566/863 (66%), Gaps = 27/863 (3%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| ||||||||||| | ||| || || ||||| || || || || |||
Sbjct 19303614 GACATAACAGAAGCCTTTTGATATTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCT 19303673
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| | |||||| |||||| |||| ||||| || | | ||| || ||||
Sbjct 19303674 TGAAGCGAAATCAGTTCCATCCAATCAAAAGGGTTCTGCACTTCATACACCTTCCCACAC 19303733
Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024
|| | | || || || || |||||||||||||| ||||| |||| ||| | |
Sbjct 19303734 CCAAGCGCACCCAATAACCTATCCGCAACAAACTCTATATACTGACTCATCAAAACCCCA 19303793
Query 13025 TTCATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083
|||||||| | || ||| || | || || | ||| | | | || || || ||
Sbjct 19303794 TTCATTCCCACCAACGC-ACATGGAAGCGCGTCACACACAAACTCTCTCTCGATCTCCAC 19303852
Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-----TGAT-AGATG 13137
||| || ||| || || ||| ||| || || |||| | || | || ||| |
Sbjct 19303853 TGCGTCACGAACAAT-TCCCTTCACACGCTC-CTC-TGGAAGCTTCTTCTTCATTAGA-G 19303908
Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197
|| | || | ||| || |||||||| || | |||||||||| ||| | ||||||
Sbjct 19303909 AGTATA-ATAA-ACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTT 19303966
Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257
|| ||||| ||||| ||||| | ||| |||||||||| ||||||||| ||| ||
Sbjct 19303967 CGAGAATGTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCT 19304026
Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317
|| || ||||||||||||||||| ||||| || | | | ||| | || |
Sbjct 19304027 TCCAGAGAAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTC----TGCGAAGG 19304082
Query 13318 ATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376
||| | || || ||||| | ||||| | ||||| | | |||| || ||
Sbjct 19304083 ATTCTGAACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGG 19304142
Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436
|||| || |||| ||||| ||||| || |||| ||||| || || | |
Sbjct 19304143 TTTCAATCGCGTGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAA 19304202
Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496
| ||||||||| || || || |||||||| || || |||||||| || || ||| |
Sbjct 19304203 GGAGGCTATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCAC 19304262
Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAA--AATCTTTCTGCTAAGTTTTCGTTAACTAT 13554
||||| | || |||| || |||| | || ||| | || | |||||| ||| ||
Sbjct 19304263 GCGCCTCAGCGACTTGAATTT--GAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGAT 19304320
Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--T 13612
||||| || || || || || || ||||| || || || | ||| | || |
Sbjct 19304321 TCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGT 19304380
Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672
|| | | ||||| ||| ||||| || | ||| || || || ||||||| ||
Sbjct 19304381 GAGAGAAT--CCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAAT 19304438
Query 13673 GAAGCAACAGCCTTCTTATACAT 13695
||||| | || ||||| |||||
Sbjct 19304439 GAAGCTTCGGCTTTCTTGTACAT 19304461
>seq2
Length=24697652
Score = 111 bits (122), Expect = 1e-19
Identities = 482/756 (64%), Gaps = 11/756 (1%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| ||| || ||||| | ||| || || ||||| || || || || ||
Sbjct 21046607 GACATAACAGAAGCTTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTAGTCTTCCCC 21046666
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| | |||||| |||||| |||| ||||| |||| | | ||| || ||||
Sbjct 21046667 TGAAGCGAAATCAATTCCATCCAATCAAAAGGGTTTTGCACATCATACACCTTCCCACAC 21046726
Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024
|| | | || || || ||||| || ||||| || || || |||| ||| | |
Sbjct 21046727 CCAAGCGCACCCAATAACCTATCAGCTACGAACTCAATATATTGACTCATCAAACCCCCA 21046786
Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084
||||| || | || || | || || | ||| | | ||||| |||||
Sbjct 21046787 TTCATCCCCACCAACGCGCATGGAAGCGCGTCACACACAAACTCCCTCTCTATTTCAACC 21046846
Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGATAGATGCTTAA- 13142
|| || || || | ||| ||| |||| |||| | || | || || |
Sbjct 21046847 GCATCACGCACAATCCC-CTTC--ACGCGCTCTTCTGGAAGCTTCTTATTCATTAGAGAG 21046903
Query 13143 -ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
||| || || || ||||||||||| || || ||||||| |||| |||||||||
Sbjct 21046904 TACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAG 21046963
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
|| || ||||| |||||||| |||||||| || | ||||||||| ||| || ||
Sbjct 21046964 AAGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCA 21047023
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT- 13320
|| || || || |||||||| |||||||| | | | |||| || | |||
Sbjct 21047024 GAGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCA----GCGAAGGATTC 21047079
Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380
| || || ||||| ||||| | ||||||| |||||| || | ||
Sbjct 21047080 TGAACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTC 21047139
Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440
|||||||| ||||| |||||| || ||| ||||| || || | | |
Sbjct 21047140 TATTGCGTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAG 21047199
Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
|||||||| || ||||| ||||| || || || || ||||| || || || | ||
Sbjct 21047200 ACTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGC 21047259
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
||| | || || | || | || ||| | || | |||||| || || |||||
Sbjct 21047260 CTCAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTC 21047319
Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596
||| || || ||||| || ||||| || || ||
Sbjct 21047320 GGAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAA 21047355
>seq11
Length=35963958
Score = 96.9 bits (106), Expect = 3e-15
Identities = 360/563 (64%), Gaps = 5/563 (1%)
Strand=Plus/Minus
Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202
||| || || || |||||||| || | |||||||||| ||| | ||||||||| |
Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682
Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262
| || || || |||||||| |||| || |||| ||| ||||||||| || || |
Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622
Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT-T 13321
| || || ||||||||||| |||||||| | | | ||| || | ||| |
Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCA----GCGAAGGATTCT 2850566
Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381
|| || ||||| | ||||| | ||||| ||| || || ||||
Sbjct 2850565 GAACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCA 2850506
Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
| |||| || ||| ||||| || || ||||| || || | | |
Sbjct 2850505 ACCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGA 2850446
Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501
|| ||||| || ||||| |||||||| || || |||||||| || || ||| | |||
Sbjct 2850445 CTGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCC 2850386
Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561
|| | || || | ||| | ||| ||| | || | |||||| ||| || ||||||
Sbjct 2850385 TCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCA 2850326
Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621
|| || || ||||| || | ||| || | ||| | |||| || | | ||
Sbjct 2850325 GAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTC 2850266
Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681
||| | | | || | || | ||| || ||||| ||||||| ||||| || |
Sbjct 2850265 TCCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCG 2850206
Query 13682 GCCTTCTTATACATCATCCATAT 13704
|| |||||||||||| ||| ||
Sbjct 2850205 GCTTTCTTATACATCTCCCAGAT 2850183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430911106487346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |