Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq6 98.7 8e-16 seq5 96.9 3e-15 seq19 87.8 2e-12 seq17 86.0 5e-12 seq3 86.0 5e-12 >seq18 Length=16588007 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||| |||||||| || | | || || |||| || || || || ||| || Sbjct 12189702 CTCCTTCTGAATATTGTAATCGGCGAGAGTG-CGACCGTCTTCGAGTTGTTTTCCGGCGA 12189760 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || ||||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 12189761 AGATCAAACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACAT 12189820 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||||| || || ||||| || ||||||||||| || || ||||||| Sbjct 12189821 TGTCGATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTTTTACCCGTTAGGGTTTTCA 12189880 Query 48714 CAAAAATCTGCATCGT 48729 | || ||||||||||| Sbjct 12189881 CGAAGATCTGCATCGT 12189896 >seq6 Length=33111450 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || |||||||| || | || ||||||| || ||||| ||| || | Sbjct 5099836 TCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAG 5099777 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 5099776 ATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 5099717 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||||| ||||| |||||||||||||| || || ||||||||| Sbjct 5099716 TCGATGGTGTCAGAGGACTCAACCTCGAGGGTTATGGTTTTACCCGTTAGGGTTTTCACA 5099657 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 5099656 AAGATCTGCATC 5099645 >seq5 Length=26376911 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||||||||| ||||||||||||| ||| || ||| | |||| Sbjct 2894397 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGGGTACGCCCATCCT 2894455 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||| || | |||| | |||||| || || || | | ||||||||| Sbjct 2894456 CAAGTTGCTTGCCAGCAAAAATGAGACGCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTT 2894515 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 2894516 GAATTTTAGCCTTTACATTATCTATGGTATCAGAACTCTCAACTTCGAGAGTGATGGTCT 2894575 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || || ||||| || |||||| Sbjct 2894576 TGCCAGTGAGTGTCTTAACAAAGATTTGCATC 2894607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATC 48555 ||| ||||| || | | ||| || | ||||| ||| |||||||||||||||||| || Sbjct 2893464 AAACCCTCCACGAAGACGTAAAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTC 2893523 Query 48556 AGCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCA 48614 || ||| ||| | | ||||||| |||||| || | | || || | |||||| ||| Sbjct 2893524 AG-CAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCG 2893582 Query 48615 CCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAG 48671 || | | ||||||||| ||||| ||||| || | || || || || | | Sbjct 2893583 GTGGGATCCCCTCCTTGTCCTGGATTTT-TGCTTTCACATTGTCG--ATTGTGTCCGAAC 2893639 Query 48672 ACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||| | || ||||| |||||||| | ||| |||||||| || ||||| Sbjct 2893640 TTTCAACCTCCAAAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATTTGCAT 2893694 >seq19 Length=18159812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| ||||||||| ||||| || || |||| ||| | ||||| Sbjct 4940871 CACCAAATGAAGGGTGGACTCCTTTTGGATGTTATAGTCTGCCAGGGTACGCCCATCCTC 4940812 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | |||||||||||| || | || |||||| ||| Sbjct 4940811 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTATCCTG 4940752 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | |||||||||| | | ||| |||| || ||||| || Sbjct 4940751 GATCTTAGCCTTCACATTATCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTT 4940692 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || || || || || |||||| Sbjct 4940691 GCCAGTAAGGGTCTTAACGAAGATTTGCATC 4940661 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| ||||||||| ||||| || || || | ||| | ||||| Sbjct 4941327 CACCAAATGAAGGGTGGACTCCTTTTGGATGTTATAGTCTGCTAGGGTACGCCCATCCTC 4941268 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||| ||| || | || |||||| ||| Sbjct 4941267 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTG 4941208 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | || || || | | ||| ||| | || || || || Sbjct 4941207 GATCTTGGCCTTCACATTGTCGATTGTGTCCGAACTCTCTACCTCCAAAGTGATTGTCTT 4941148 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| ||||||||||||||||| Sbjct 4941147 GCCAGTAAGAGTCTTCACAAAAATCTGCAT 4941118 >seq17 Length=21299880 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | || |||| || ||||| || ||| || | Sbjct 4985005 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 4984946 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 4984945 ATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 4984886 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| || || |||| || |||||||| || || || |||||||| Sbjct 4984885 TCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCACG 4984826 Query 48716 AAAATCTGCATCGTG 48730 || |||||||||||| Sbjct 4984825 AAGATCTGCATCGTG 4984811 >seq3 Length=30153019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | || |||| || ||||| || ||| || | Sbjct 15142529 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 15142588 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 15142589 ATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 15142648 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| || || |||| || |||||||| || || || |||||||| Sbjct 15142649 TCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCACG 15142708 Query 48716 AAAATCTGCATCGTG 48730 || |||||||||||| Sbjct 15142709 AAGATCTGCATCGTG 15142723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421181516231573