Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 178 2e-39 seq9 176 6e-39 seq2 167 3e-36 seq1 105 8e-18 seq2896 91.5 2e-13 >seq11 Length=35963958 Score = 178 bits (196), Expect = 2e-39 Identities = 410/613 (67%), Gaps = 6/613 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||| || || || || || |||| || | ||||| || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || ||||| ||||| || || | ||| |||||||| ||||| | | ||| ||||| Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | ||||| |||||||| || |||||| |||| ||| | ||| | | | ||| Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAG--GATTCTGA 2850564 Query 33476 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 ||| ||||| | ||||| || || ||| | |||||||| || ||||| | Sbjct 2850563 ACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAAC 2850504 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 || | || | | |||||| ||| ||| || | ||| || || | | ||||| Sbjct 2850503 CGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGACT 2850444 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||| || ||||| || |||||||| || || || |||||||||||| | ||||| Sbjct 2850443 GTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCTC 2850384 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA-ATTTTCATTCACTATTCCGTCAC 33712 | | || | ||| || || || | ||||| ||| |||||| || || |||||| Sbjct 2850383 AGCGACTTGGATTTCAGT-CATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAG 2850325 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 ||| || || || || | || ||||| | ||| | |||| | || || || | Sbjct 2850324 AGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCT 2850265 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | || || | ||| | ||| ||||| || | ||||| || ||||| || | Sbjct 2850264 CCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGG 2850205 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTG 33892 | || |||||||| | |||||| | | ||||| ||||| || || ||| | | || Sbjct 2850204 CTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGTCTG 2850145 Query 33893 GATTTGGTGCAAG 33905 ||||||| || || Sbjct 2850144 GATTTGGAGCCAG 2850132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | |||||||| || || || |||||| | | || | |||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 63672 TACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 || || | | ||| || ||||| |||| ||| |||||||| || | || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTC 63787 ||||||||||||||||||||||| | ||||| || | ||||| | |||||| | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAAC-AACTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 63788 CAAAGTTTTAAAACCAAAATA 63808 | ||||| |||||||| || Sbjct 31406265 AAGGGTTTTGAAACCAAAGTA 31406245 >seq9 Length=21753712 Score = 176 bits (194), Expect = 6e-39 Identities = 410/611 (67%), Gaps = 12/611 (2%) Strand=Plus/Plus Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 ||||| |||||||| || || || || || |||| || | ||||| || || || Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 || |||||||||| || || ||||||||||||||||| | | ||| |||||| || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAGAAA 19304036 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33480 || |||||||| || |||||| |||| || | ||| | | | ||| || Sbjct 19304037 AATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAG--GATTCTGAACCGT 19304094 Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | ||||| || || |||||| | |||||||| || ||||| || || | Sbjct 19304095 CGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAATCGCGT 19304154 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || | |||||| ||| ||||| | ||| || |||| | || ||||||| Sbjct 19304155 GGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCTATACA 19304214 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || || || ||||||||||| || || || ||||||||| | ||||| | | Sbjct 19304215 TCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGCGA 19304274 Query 33659 TCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || | || || || | | |||| || | |||||| || |||||||| ||| Sbjct 19304275 CTTGAATTTGAGT-CATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGCG 19304333 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || || || | | ||||| || || | || ||||| |||| || || | Sbjct 19304334 GCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTC-GGTG--AGAGAATCC 19304390 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||| | ||||| ||| | ||| |||||||| | ||||| ||||| || || || Sbjct 19304391 CAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCT 19304450 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | |||||| | | ||||||||||| || || || | || ||| Sbjct 19304451 TTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACATGCAGAAACGATCTGGG 19304510 Query 33895 TTTGGTGCAAG 33905 ||||| || || Sbjct 19304511 TTTGGAGCCAG 19304521 >seq2 Length=24697652 Score = 167 bits (184), Expect = 3e-36 Identities = 415/623 (67%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||| ||||| | |||||| |||| |||| ||||| || | Sbjct 21046905 ACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 21046964 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||| ||||| || || || | ||||||||| | | ||| ||||| Sbjct 21046965 AGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCAG 21047024 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | ||||| || ||||| || |||||| |||| || | || | | | ||| Sbjct 21047025 AGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAAG--GATTCTGA 21047082 Query 33476 CATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 || ||||| | ||||| || || || || || ||||| ||||| ||||| Sbjct 21047083 ACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTCTAT 21047142 Query 33534 GGCATTAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 || | || | || | ||||| ||| |||||| | ||| || || | | |||| Sbjct 21047143 TGCGTGGAATA-ATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAGAC 21047201 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||||| || ||||| || || || || || ||||| || |||||||| | |||| Sbjct 21047202 TATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGCCT 21047261 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAA-TTTTCATTCACTATTCCGTCA 33711 | | | |||| ||||| || | | ||||| | | |||||| || |||||||| Sbjct 21047262 CAGCGACTTGTATCTCTGT-CATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTCG 21047320 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 || || || || || | | ||||| || || | |||| | || || Sbjct 21047321 GAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAG 21047380 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| | || ||||| ||| | ||| |||||||| | ||||| ||||| || ||| Sbjct 21047381 TCCCAGTGGCGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCT 21047440 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTT 33891 || ||||| ||||| | |||||| | | |||||||||||||| || || | || Sbjct 21047441 GCTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAAACGATCA 21047500 Query 33892 GGATTTGGTGCAAGGATGGGTTC 33914 || ||||| ||||| | ||||| Sbjct 21047501 GGGTTTGGAGCAAGAAGAGGTTC 21047523 >seq1 Length=36457581 Score = 105 bits (116), Expect = 8e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| |||| |||||||| || || || |||||| | | ||| | ||| | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | | ||| || || || || | ||| |||||||| || | || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||||||||||||||| | ||| | || | ||||||| |||||| | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAAC-AACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAA 33689621 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| |||||||| || Sbjct 33689622 GGGTTTTGAAACCAAAGTA 33689640 >seq2896 Length=25968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | || || | ||| | || | || |||||||||||| || Sbjct 4779 TCCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCC 4720 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || || || ||||||||||||| || || Sbjct 4719 ATTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 4660 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || |||| ||| | || || ||| || || ||||| || Sbjct 4659 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATAT 4600 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||||||| |||||||| ||||| Sbjct 4599 ACCCTCTATACTATCATCTTTCATG 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622841509220680