Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5 109 4e-19 seq19 89.7 4e-13 >seq5 Length=26376911 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || ||||| ||||| || | ||| | ||||| | ||| Sbjct 2893948 TGGAGAGTTGACTCTTTCTGGATGTTATAGTCAGCTAAGGTACGACCATCCTCGAGTTGC 2894007 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| ||||||||| ||||||||| || | |||||||||||| ||||| Sbjct 2894008 TTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGAATTTTG 2894067 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | |||| ||| | |||||||| ||||||||| Sbjct 2894068 GCCTTCACATTGTCAATTGTGTCAGAGCTCTCCACTTCAAGTGTGATGGTCTTTCCGGTC 2894127 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || ||||| Sbjct 2894128 AAGGTCTTGACAAAGATTTGCAT 2894150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || ||||||||||| || | ||| | | ||| Sbjct 2894167 AGCACTAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCTAAGGTCCGGCCATCC 2894226 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | ||||| | ||||||||| || | |||||||||||| Sbjct 2894227 TCAAGCTGCTTGCCAGCAAAGATAAGTCTCTGTTGGTCGGGTGGGATGCCCTCTTTGTCT 2894286 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | | ||||| ||| ||| | |||||||| Sbjct 2894287 TGAATTTTGGCCTTCACATTATCTATGGTGTCCGAACTCTCAACTTCAAGTGTGATGGTC 2894346 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| || |||||||| || ||||| Sbjct 2894347 TTTCCGGTCAAGGTCTTGACAAATATTTGCAT 2894378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 ||||||| || || | | || | || || |||||||||||||| ||||||||||| | Sbjct 2893466 ACCCTCCACGAAGACGTAAAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 2893525 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | | |||||||| || || || ||| | || | || ||| |||||| | Sbjct 2893526 CAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTG 2893585 Query 16827 GCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC-- 16882 | | ||||| ||||| || |||||| ||||| | | | | |||| ||| | Sbjct 2893586 GGATCCCCTCCTTGTCCTGGATTTTTGCT--TTCACATTGTCGATTGTGT--CCGAACTT 2893641 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || |||| |||||||| || ||||||| || || ||||| || |||||| Sbjct 2893642 TCAACCTCCAAAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATTTGCATT 2893695 >seq19 Length=18159812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||| || ||||||| ||| ||||||| | || Sbjct 4941092 TGAAGAGTGGACTCCTTCTGGATGTTATAATCGGCCAAAGTTCGACCGTCCTCAAGCTGC 4941033 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | ||||||| ||| || || || | ||||| ||||| || ||| Sbjct 4941032 TTGCCAGCAAAGATAAGCCTCTGCTGATCGGGTGGGATACCCTCCTTGTCTTGGATCTTT 4940973 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| |||| || | ||||||||| ||||||| Sbjct 4940972 GCT--TTGACATTGTCAATGGTGTCGGAACTCTCCACCTCAAGGGTGATGGTCTTTCCGG 4940915 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || ||||| || ||||| Sbjct 4940914 TCAAGGTCTTAACAAAGATTTGCAT 4940890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405020989963270