Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19 114 1e-20 seq17 113 4e-20 seq3 113 4e-20 seq4 98.7 8e-16 seq12525 93.3 4e-14 seq5 91.5 1e-13 >seq19 Length=18159812 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 ||| || ||||| || || | ||| | ||| | |||||||| |||||||| |||||||| Sbjct 4557378 AATTCCACCACGGAGCCTAAGAACAAGATGAAGAGTAGATTCCTTTTGAATATTGTAATC 4557319 Query 114212 -GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 ||| | || | |||||||||||||||||||||| | || | ||| ||||| || | Sbjct 4557318 AGCT-AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTG 4557260 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | |||| |||||||| || ||||| ||| | | || | ||||| || || Sbjct 4557259 GTGGAACTCCTTCTTTATCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTTT 4557200 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 4557199 CAACTTCTAGGGTTATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 4557148 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || ||||| | || || || ||||| ||||| || || Sbjct 4941347 ATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTATAGTCT 4941288 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||||| ||| ||||| || || |||||| ||||||||||||| |||||||| Sbjct 4941287 GCT-AGGGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 4941229 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||| || ||||| || || ||||| || | | || | ||||| | || Sbjct 4941228 AGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAACTCTC 4941169 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || ||||| || |||||||||||||| Sbjct 4941168 TACCTCCAAAGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 4941118 >seq17 Length=21299880 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || ||| |||||||| ||||| || Sbjct 4985011 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCG 4984952 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || || ||||| ||||| ||||| || Sbjct 4984951 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 4984892 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| |||||| || || | ||| | ||||| || || || ||| Sbjct 4984891 ACATTGTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTT 4984832 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4984831 TTCACGAAGATCTGCAT 4984815 >seq3 Length=30153019 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || ||| |||||||| ||||| || Sbjct 15142523 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCG 15142582 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || || ||||| ||||| ||||| || Sbjct 15142583 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 15142642 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| |||||| || || | ||| | ||||| || || || ||| Sbjct 15142643 ACATTGTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTT 15142702 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 15142703 TTCACGAAGATCTGCAT 15142719 >seq4 Length=27333975 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || ||| ||||| || ||||| || Sbjct 22406907 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCGAGCTGTTTTCCG 22406848 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| || || |||||||| ||||| ||||| ||||| ||||| || Sbjct 22406847 GCGAAGATGAGGCGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTC 22406788 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||||| || || | ||| | ||| || || || || ||| Sbjct 22406787 ACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTTATCGTCTTACCCGTTAGGGTT 22406728 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 22406727 TTCACGAAAATCTGCAT 22406711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 || ||||| || | || | || ||||| || || || || ||||| ||| | || | Sbjct 24477607 AGCCTCAACACAAGGTGAAGTGTTGATTCCTTCTGGATATTATAATCAGCT-AGGGTTCT 24477549 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 ||||||||||||||| |||||| | || | | ||| || || || ||||| ||||| Sbjct 24477548 TCCATCTTCAAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTC 24477489 Query 114284 TTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 || || |||||| |||| | || | |||||||| || || || | ||| Sbjct 24477488 CTTATCTTGAATCTTCGCCTTTACGTTGTCGATGGTGTCGGAACTCTCCACTTCTAGGGT 24477429 Query 114344 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||||||||| || |||||||| || || ||||| Sbjct 24477428 TATGGTTTTGCCGGTGAGGGTTTTTACGAAGATTTGCAT 24477390 >seq12525 Length=279716 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || |||||||| || | || || |||||| Sbjct 230458 AACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCTTC 230399 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||||||||| |||| || | ||| ||||| |||||||||||||| ||||| Sbjct 230398 GAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTG 230339 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| |||||| | | ||| || || | || | || || Sbjct 230338 GATCTTCGCCTTGACATTATCAATGGTGTCAGAGCTTTCTACCTCAAGAGTGATTGTCTT 230279 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || || || ||||||||||||||| || Sbjct 230278 TCCAGTAAGGGTCTTCACAAAAATCTGCATGCCT 230245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| |||||||| ||| Sbjct 229794 ATACCACCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCG 229735 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||||||| ||||| |||||||||| || || ||||| Sbjct 229734 GCGAGGGTGCGGCCATCTTCAAGTTGTTTTCCAGCAAAGATGAGACGTTGCTGATCCGGT 229675 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | |||| |||||| | || Sbjct 229674 GGGATCCCTTCCTTGTCTTGGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAACTCTCA 229615 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || ||||| || ||||| Sbjct 229614 ACTTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 229565 >seq5 Length=26376911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || || ||||| ||||||||||| Sbjct 2894377 ATACCACCACGAAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 2894436 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| |||||||| || ||||| | ||||||||||||||||| || Sbjct 2894437 GCAAGGGTACGCCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGACGCTGTTGGTCTGGT 2894496 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||| || |||| | || | ||| || | || Sbjct 2894497 GGGATCCCTTCCTTGTCTTGAATTTTAGCCTTTACATTATCTATGGTATCAGAACTCTCA 2894556 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || || || || ||||| || ||||| Sbjct 2894557 ACTTCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACAAAGATTTGCAT 2894606 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| || | |||||| ||||||||| ||||| ||| Sbjct 2893726 GTAGACTCCTTCTGAATGTTGTAGTCTGCAAGAGTACGTCCATCTTCAAGCTGTTTCCCA 2893785 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | || ||||| || || || || |||||||| |||||| ||| Sbjct 2893786 GCAAAAATCAACCTTTGCTGGTCTGGCGGGATACCCTCTTTGTCTTGAATCTTAGCTTTC 2893845 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| || | || ||||| || || || Sbjct 2893846 ACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAGAGTGATTGTCTTGCCAGTAAGTGTC 2893905 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 2893906 TTGACAAAAATCTGCAT 2893922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420064900973676