Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 143 3e-29 seq11 127 2e-24 seq1 98.7 1e-15 seq2896 84.2 2e-11 >seq9 Length=21753712 Score = 143 bits (158), Expect = 3e-29 Identities = 385/588 (65%), Gaps = 17/588 (3%) Strand=Plus/Plus Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 ||||| || ||||||||||| || || || |||| |||||| || || || ||||| Sbjct 19303917 AAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGTA 19303976 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 | ||| ||||| | || | |||||| | ||| ||||| | | || |||||| || Sbjct 19303977 AGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAGAAA 19304036 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 ||||| ||||| || ||||||||||| || | |||| | | | ||| | | Sbjct 19304037 AATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGC-------GAAGGATTCTGA 19304089 Query 19138 ----TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 | |||||| | ||||| ||||| |||||| | ||||| || || || || || Sbjct 19304090 ACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAAT 19304149 Query 19194 AGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 | | |||| | | || ||| | | ||||| | ||||| || | | | Sbjct 19304150 CGCGTGGAATAATCGGTTTTTA---TCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAG 19304206 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 || ||||| || || || |||||||| || || || || || ||||| ||| | || Sbjct 19304207 GCTATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGC 19304266 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 || | | || | || | | || ||| || | | |||||| ||| ||||| || Sbjct 19304267 CTCAGCGACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTC 19304326 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT 19430 || || || || || | | ||||| || || || |||||| ||| | | Sbjct 19304327 GGAGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGAGAGA 19304386 Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 || ||||| || ||||| ||| | ||| |||||||| | ||||| || ||||| || Sbjct 19304387 ATCCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTC 19304446 Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||||| || ||||| | ||| || | | | ||||| || ||||| || Sbjct 19304447 GGCTTTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACAT 19304494 >seq11 Length=35963958 Score = 127 bits (140), Expect = 2e-24 Identities = 380/586 (65%), Gaps = 3/586 (1%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| ||| || || ||||||||||| || || || |||| |||||| || || || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | || | |||||||| || ||||| || || | ||||||||||| | || ||||| Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 | ||||| || ||||| || ||||| ||||| || | || | | | || Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAA---GGATTCTG 2850565 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | || ||||| | ||||| ||||| ||| | ||||| || ||||| || | Sbjct 2850564 AACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAA 2850505 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | || | | | ||| | | ||| || | ||||| || | | | || Sbjct 2850504 CCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGAC 2850445 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 ||||||| || ||||| |||||||| ||||| || || |||||||| ||| | || | Sbjct 2850444 TGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCT 2850385 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 | | | || | |||| | ||| ||| || | | |||||| ||| || || ||| Sbjct 2850384 CAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAG 2850325 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTAT 19432 || || || || || | || ||||| | ||| || ||| | ||| | | | Sbjct 2850324 AGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCT 2850265 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||| | | || | ||| | ||| ||||| || | ||||| ||||| || || | Sbjct 2850264 CCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGG 2850205 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 |||| |||||||| | ||| || | | | ||||| || ||||| || Sbjct 2850204 CTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACAT 2850159 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| |||| | | |||||| ||||||||| Sbjct 31406824 CCACCTTGATCAACATAGCGAGCAGTATCATTAAAAACACGCAGCATTGGAACAATACCA 31406765 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| |||||| || ||||| || | |||| || || || ||| Sbjct 31406764 TTGGATGTCCCATTAGTTCCCCGGATGTAACTGCCTGTGGCTCGGATGTTGTGAACAGAA 31406705 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || ||||||| || | |||||||| ||| Sbjct 31406704 ACACCAATTCCTCCAGCTGATTTGCTGATCGCAGCACACTCCTTCAAAGTATCATATATT 31406645 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || ||||||||||||||| ||||| | || || |||||| Sbjct 31406644 CCCTCTATACTATCATCTTTCATACACACAAGGAAGCAACTA 31406603 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || |||||||||||| | |||||| ||| ||| | || | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 48660 TATGTTTCAATAACAGAATCTAT---ATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||||| | | |||||||||| |||| ||| || || || | ||| || | ||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCC--TTG-TGAATTCCAACAGAAACCCTCATC 31406325 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATT-TATTTTCAAAAGATATGATTTTTC 48775 ||||| | |||||||||||||||| |||| || | ||||| || || || | || Sbjct 31406324 AACATGTGCTGAGGTCTTTCAACAA-CTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTC 31406266 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 | ||||| |||||||| || | || |||||| |||||| || ||| Sbjct 31406265 AAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATATATGATT 31406214 >seq1 Length=36457581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||||| || | || | | |||||| ||||||||| Sbjct 33689080 CCACCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 33689139 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| || | || | || || || ||| Sbjct 33689140 TTGGATGTCCCATTAGTTCCACGAATGTAACTCCCTGTGGCACGAATGTTGTGAACAGAA 33689199 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| ||||||| || | |||||||| ||| Sbjct 33689200 ACACCAATTCCTCCAGCTGATTTGCTGATTGCAGCACACTCCTTCAAAGTATCATATATT 33689259 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || ||||||||||||||| ||||| | || || |||||| Sbjct 33689260 CCCTCTATACTATCATCTTTCATACACACAAGGAAGCAACTA 33689301 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| |||| || |||||||||||| | |||||| ||| || | | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| | | ||||||| || || | ||| || || || | ||| || | ||| || Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACCCTCATCAA 33689562 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||||||||||||| ||| | | ||||| || || || | || | Sbjct 33689563 CATGTGCTGAGGTCTTTCAACAACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAAG 33689622 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| |||||| Sbjct 33689623 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCAT 33689663 >seq2896 Length=25968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/202 (69%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 47342 TAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAA 47401 ||| |||||||| || || ||||| ||||||||||| | | | |||||||| |||| Sbjct 6757 TAGAACTCTACGACTGTAGATATTTGAAGTATATGGTTCAAAACACTCATTATTACCAAG 6698 Query 47402 AATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CTATTTCTTACTCCAT 47460 ||| || ||| ||||| |||||||| | ||||| || ||| |||||| || |||| Sbjct 6697 AATCTGGCTAGTAGATGCAGTAGGCATAGGGGCAAC-AAGAAGTGAATTTCTCACACCAT 6639 Query 47461 ATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCC 47520 |||| |||| |||||||||||| ||| ||| || ||| || Sbjct 6638 TTTTTAATATCCTCTCCCTTAGTGCATTCCAATCCCAACGATTTGAGGGTGTCACACCCC 6579 Query 47521 AAAAATCATATTGAAGAATTCC 47542 | | || |||||||||||| Sbjct 6578 ACATGTCTGGTTGAAGAATTCC 6557 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | | |||||| | ||| ||| Sbjct 4778 CCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCCA 4719 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||| || | || | ||||| || || Sbjct 4718 TTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGAG 4659 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | ||||||| ||| | || ||||| || Sbjct 4658 ACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATATA 4599 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 4598 CCCTCTATACTATCATCTTTCAT 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562013431215720