Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq664 540 3e-149 seq19 179 1e-40 seq5 161 3e-35 seq3 138 3e-28 seq1 113 1e-20 seq8 111 5e-20 seq9 104 7e-18 seq3662 93.3 1e-14 seq17 93.3 1e-14 >seq664 Length=18451 Score = 540 bits (598), Expect = 3e-149 Identities = 720/996 (72%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 ||| || || ||||| || || |||||||| |||||||| ||||| ||||| |||||||| Sbjct 514 CTCGGCCGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAT 573 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| || ||||| | | ||| ||||| || || | | ||| | || Sbjct 574 ACCAAGGTTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC 633 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| || || || ||||| || || || || | ||| |||||||| || ||| || | Sbjct 634 AACTACGGATTGGTTGAAATTGAAACCATTTAAATTGAAAGCCATGGTACTGATACCTAA 693 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 | ||||| ||| || | || || ||||||| ||| || |||||||||||| ||| Sbjct 694 CGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGAAAGAAATGTAAAGAACGAGA 753 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 ||| || || |||||||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 754 ATTATTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 813 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||||| |||||||||||||| || ||| | || || | ||| ||| | | || Sbjct 814 ATTATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGT 873 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | || ||||||||| ||| | | || Sbjct 874 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCC 933 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| || || | |||||| || ||||||||||| |||||||| || || Sbjct 934 GCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATATTGTGCTCAGC 993 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||| ||||| | ||||||||| |||||||||||||| || |||||||||||||| || Sbjct 994 CTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCCGAAAA 1053 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 ||||| || |||| || || | || || || | |||| || || ||||| || |||| Sbjct 1054 GCTTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTG 1112 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | ||||||||||||| | || | Sbjct 1113 AATATGCAACCGCAATCCAAGGGCGCATACCCAGACGAAAACTAAGTTCCCACTCACGAC 1172 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| |||| || | ||||| | |||||| | || | |||| || || || |||| Sbjct 1173 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCAT 1232 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| | ||||||||| | ||| || |||||||| || || || ||||| || || || Sbjct 1233 TGTATAACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAGTGCAAACCGAT 1290 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || || || || || || |||||||| || ||||||||||| Sbjct 1291 AGCCGCAGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCC 1350 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || || ||||| || || || || || ||||| || ||||| | ||| || | || Sbjct 1351 AGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGCGATAAT 1410 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 |||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1411 AAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTA 1470 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | ||||| || | ||||| |||||| Sbjct 1471 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1506 >seq19 Length=18159812 Score = 179 bits (198), Expect = 1e-40 Identities = 216/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 ||| || || ||||| || || |||||||| |||||||| ||||| ||||| |||||||| Sbjct 6185728 CTCGGCCGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAT 6185669 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| || ||||| | | ||| ||||| || || | | ||| | || Sbjct 6185668 ACCAAGGTTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC 6185609 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| || || || ||||| || || || || | ||| |||||||| || ||| || | Sbjct 6185608 AACTACGGATTGGTTGAAATTGAAACCATTTAAATTGAAAGCCATGGTACTGATACCTAA 6185549 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 | ||||| ||| || | || || ||||||| ||| || |||||||||||| ||| Sbjct 6185548 CGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGAAAGAAATGTAAAGAACGAGA 6185489 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 5478 ||| || || |||||||| |||||||| | || ||||| || |||||||| || Sbjct 6185488 ATTATTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 6185435 >seq5 Length=26376911 Score = 161 bits (178), Expect = 3e-35 Identities = 247/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 5830 TTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTG 5889 |||||| | || |||| |||| || | ||||| | |||||| | || | |||| Sbjct 10577032 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTC 10577091 Query 5890 GTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAG 5947 || || || |||||||| | ||||||||| | ||| || |||||||| || || || Sbjct 10577092 ATAAGGACCGCCATTGTATAACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAA 10577149 Query 5948 AAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCA 6007 ||||| || || || || || | || | || || || || || || |||||||| Sbjct 10577150 AAGTGCAAACCGATAGCCGCAGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCG 10577209 Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCT 6067 || ||||||||||| | || || ||||| || || || || || ||||| | ||||| Sbjct 10577210 TAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAAGGGCAGCA 10577269 Query 6068 ACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCA 6127 | ||| || | |||||| ||| ||||||||| || | | || ||||| || |||||| Sbjct 10577270 ATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCA 10577329 Query 6128 AACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| || | || || ||||| | ||||| | | ||||| |||||| Sbjct 10577330 AACCATCCGATGTAAAGACGGTTTTCAGTGCTGATTATCCAGTTACAGAA 10577379 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 ||| || || ||||| || || |||||||| |||||||| |||| ||||| |||||||| Sbjct 10060236 CTCGGCCGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTATGTTCATGCATAACTTCCAT 10060295 Query 5245 ACCAAGGTTGGCACGGTT 5262 ||||||||| || ||||| Sbjct 10060296 ACCAAGGTTAGCTCGGTT 10060313 >seq3 Length=30153019 Score = 138 bits (152), Expect = 3e-28 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 5927 GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCT 5986 || |||||||| || || || ||||| || || || || || | || | || || Sbjct 19659976 GCCGCTTCCCATATCGGGTAAAAGTGCAAACCGATAGCCGCAGAAGTAGGAATAATAGCA 19659917 Query 5987 CCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCG 6046 || || || || |||||||| || ||||||||||| | || || ||||| || || || Sbjct 19659916 CCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCA 19659857 Query 6047 ATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGT 6106 || || ||||| || ||||| | ||| || | |||||| ||| ||||||||| || | Sbjct 19659856 ATATCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAG 19659797 Query 6107 GCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACC 6166 | || ||||| || ||||||||||| || | || || ||||| | ||||| || | | Sbjct 19659796 GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATC 19659737 Query 6167 CAGTCACAGAA 6177 |||| |||||| Sbjct 19659736 CAGTTACAGAA 19659726 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 5189 GCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCA 5248 || || || || || || |||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 15965265 GCCGCAGCGAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCA 15965324 Query 5249 AGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 | ||| || ||||| | | ||| |||||||| Sbjct 15965325 ATGTTAGCTCGGTTAATAATATCAGCCCAAGT 15965356 >seq1 Length=36457581 Score = 113 bits (124), Expect = 1e-20 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 5196 CTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGG 5255 |||| || || |||||||| |||||||| ||||| ||||| |||||||| |||||||| | Sbjct 19599591 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATGCCAAGGTTAG 19599532 Query 5256 CACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACT 5315 | ||||| | | ||| ||||| | || | | ||| | ||||| | || | Sbjct 19599531 CTCGGTTTATAATATCAGCCCATATATTAATTACACGACCTTGACTATCAACTATGGATT 19599472 Query 5316 GATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCC 5375 | ||||| || || || || | ||| |||||||| || | | || | | ||||| || Sbjct 19599471 GGTTGAAATTGAAACCATTTAAATTGAAAGCCATGGTACTGGTACCTAACGCGGTAAACC 19599412 Query 5376 ATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGC 5435 | || | || || ||||||| ||| | |||||||||||| ||| || | || | Sbjct 19599411 AGATACCTACTACAGGCCAAGCAGCTAAAAAGAAATGTAAAGAACGAGACTTATCGAAAC 19599352 Query 5436 TAGCATA 5442 ||||||| Sbjct 19599351 TAGCATA 19599345 >seq8 Length=25521646 Score = 111 bits (122), Expect = 5e-20 Identities = 201/293 (69%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 5768 GCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTA 5827 || ||||| | ||||||||||| || |||||| || |||| || || | ||||| Sbjct 14924973 GCTGCAACAAGAGCTGAATATGCAACCGCAATCCAAGGGTGCATACCCAAACGAAAACTA 14924914 Query 5828 AGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGT 5887 |||||||| | ||| || | |||| || | ||||| | |||||| | || | ||| Sbjct 14924913 AGTTCCCACTCGCGACCTATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 14924854 Query 5888 TGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAG 5947 | || || || |||||||| | ||||||||| | | || ||||||| || | || Sbjct 14924853 TAATAAGGACCGCCATTGTATAACCATTCATCAACGTATGCCACTTCCCATATCGAGTAA 14924794 Query 5948 AAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCA 6007 ||||| | || || || | | || | || || || || || || |||||||| Sbjct 14924793 AAGTGCTAACCTATAGCCGCATAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCG 14924734 Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGG 6060 || ||||||||||| | | || ||||| || || || || || ||||| || Sbjct 14924733 TAAAGTAGAGATCCAG-AAAAGGCTCACGAATACCATCAATATCTACTGGAGG 14924682 >seq9 Length=21753712 Score = 104 bits (114), Expect = 7e-18 Identities = 175/252 (69%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || ||||| || || ||||||| |||||||| ||||| || || ||||||||||||||| Sbjct 18376386 GCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGTATAACTTCCATACCAAGG 18376445 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || || ||||| | | ||| || || | || | | ||| | ||||| || Sbjct 18376446 TTAGCTCGGTTAATAATATCAGCTCAGATATTAATTACACGACCTTGACTATCAACTACA 18376505 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG-T 5370 | || ||||| || || || || | || |||||||| ||| ||| || | | || | Sbjct 18376506 TATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATGGTGCTGATACCTAATGCGGTT 18376565 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 || ||| || | || || |||||| | | || |||||||||||| || ||| || Sbjct 18376566 AAACCAGATACCTACTACAGGCCAAACAACTAGAAAGAAATGTAAAGAACAAGAATTATT 18376625 Query 5431 AAAGCTAGCATA 5442 || |||||||| Sbjct 18376626 GAAACTAGCATA 18376637 >seq3662 Length=122019 Score = 93.3 bits (102), Expect = 1e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 ||| || || ||||| || | |||||||| |||||||| ||||| || || |||||||| Sbjct 4698 CTCGGCCGCAGCTAGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATAACTTCCAT 4639 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| || | | | | | ||| | | |||| || | | ||| | | || Sbjct 4638 ACCAAGGTTAGCTCAGCTAATAATATCAGTCTAAGTATTAATTACACGACCTTGACAATC 4579 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| || || | |||||| ||||| || || | ||| ||||| ||||| ||| || | Sbjct 4578 AACTACGGATTAATTGAAATTAAAACCATTTAAATTGAAAGCTATAGTACTGATACCTAA 4519 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAA 5395 | | ||| ||| || | || || || ||| Sbjct 4518 CGCGATAAACCAGATACCTACTACAGGTCAA 4488 >seq17 Length=21299880 Score = 93.3 bits (102), Expect = 1e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 5585 ATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGC 5644 |||||| ||| | | || |||||||| ||||| || || | |||||| || |||||| Sbjct 19911066 ATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGC 19911007 Query 5645 ATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTAC 5693 ||||| |||||||| || ||||| ||||| | ||||||||| |||| || Sbjct 19911006 ATAAGAATATTGTGCTCAGCCTGAAATACAATCATAAAGTTGAAAGCAC 19910958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152624996032878