Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq19 96.9 3e-15 seq12525 91.5 1e-13 seq5 89.7 4e-13 seq18 86.0 5e-12 seq6 86.0 5e-12 >seq4 Length=27333975 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||| ||||||| | | | | | || || || ||||| || ||||| Sbjct 24477809 CTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGCTTCCCTGCAAA 24477750 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||||| |||| || ||||| || |||||| ||| ||| Sbjct 24477749 AATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTAGCTTTCACATT 24477690 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || |||||||||| ||||| ||||| || |||||||| || || Sbjct 24477689 ATCAATTGTATCAGAACTTTCCACCTCCAAAGTAATGGTTTTCCCAGTCAAAGTCTTCAC 24477630 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 24477629 AAAAATCTGCATC 24477617 >seq19 Length=18159812 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || ||| ||| || || || || ||||||| | | ||||| Sbjct 4941563 AGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTTCGA 4941504 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| ||||| | |||| |||||| Sbjct 4941503 CCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATACCCTCC 4941444 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || ||||||||| | || Sbjct 4941443 TTGTCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAACTCTCCACCTCAAGGGTG 4941384 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| || ||||| Sbjct 4941383 ATTGTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCAT 4941346 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| ||||| || ||||| || || || ||||| ||||||| Sbjct 605670 CCACCCCTAAGCCTCAAAACCAAGTGAAGCGTTGATTCCTTCTGTATATTATAATCAGCA 605729 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||||||||||||| ||||| |||| | ||| || |||| ||| Sbjct 605730 AGAGTGCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGG 605789 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 605790 ATACCCTCCTTGTC 605803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || || || ||||| ||||| |||| || | | Sbjct 4942019 AGACGCAACACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTT 4941960 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || ||||||||||| |||||||| |||| | ||| || || | ||||| | ||||| Sbjct 4941959 CCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATC-CCCTC 4941901 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| || ||| || ||| | | | | || || ||||||||||| || Sbjct 4941900 CTTGTCCTGGATTTTTGCCTTCACATTATCGATGGTGTCCGAACTCTCCACCTCCAATGT 4941841 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||| ||| || ||||| |||||||| Sbjct 4941840 AATAGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 4941802 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || ||| ||| || || || || ||||| | | | ||||| Sbjct 4941107 AGACGCAAGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTATAATCGGCCAAAGTTCGA 4941048 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| || || | ||| ||||| | || | |||||| Sbjct 4941047 CCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCGGGTGGGATACCCTCC 4940988 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || ||||||||| | || Sbjct 4940987 TTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTCTCCACCTCAAGGGTG 4940928 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| || ||||| Sbjct 4940927 ATGGTCTTTCCGGTCAAGGTCTTAACAAAGATTTGCAT 4940890 >seq12525 Length=279716 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | || || ||| ||| || ||||| ||||| |||| || | | Sbjct 230694 AGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTT 230635 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| | |||||| || | ||| | || ||| Sbjct 230634 CCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCC 230575 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | || || || ||| ||||| | ||| Sbjct 230574 TTATCCTGAATCTTTGCCTTCACATTATCAATAGTATCCGAACTCTCAACCTCAAGAGTA 230515 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || |||||||||||||| Sbjct 230514 ATAGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 230477 >seq5 Length=26376911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| ||||| || || ||| || ||||| ||||||||||||| Sbjct 20170923 CCTCCCCTAAGCCTCAAGACCAAGTGAAGTGTGGATTCCTTTTGTATATTGTAATCAGCA 20170982 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| ||||||||| ||||| |||| | ||| || || | || Sbjct 20170983 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGG 20171042 Query 48660 ACGCCCTCCTTGTCGCTAA 48678 | ||||||||||| |||| Sbjct 20171043 ATACCCTCCTTGTC-CTAA 20171060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| |||||||| ||||| |||| || | | | || ||||||||| Sbjct 2893492 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGC 2893551 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| |||| | ||| || ||| |||||| | ||||||||||| || || Sbjct 2893552 TTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCCTGGATTTT 2893610 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | ||| ||| | | | || || || ||||||| || || || || || || Sbjct 2893611 TGCTTTCACATTGTCGATTGTGTCCGAACTTTCAACCTCCAAAGTGATGGTCTTACCGGT 2893670 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || ||||| || ||||| Sbjct 2893671 CAAAGTCTTCACAAAGATTTGCAT 2893694 >seq18 Length=16588007 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||||||||| | ||| | ||| |||| || | || || ||||| || Sbjct 12189702 CTCCTTCTGAATATTGTAATCGGCGAGAGTGCGACCGTCTTCGAGTTGTTTTCCGGCGAA 12189761 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || |||| |||| || |||||||| ||||| || ||| Sbjct 12189762 GATCAAACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 12189821 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | || ||||| | ||||| ||||| ||||| | ||||| || Sbjct 12189822 GTCGATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTTTTACCCGTTAGGGTTTTCAC 12189881 Query 48755 AAAAATCTGCATCGT 48769 || ||||||||||| Sbjct 12189882 GAAGATCTGCATCGT 12189896 >seq6 Length=33111450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || || |||| ||| | | | || |||||||| || || || || Sbjct 6669297 CTCCTTCTGAATGTTATAGTCAGCAAGAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAA 6669238 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||||||||| | |||| ||||||||||| || ||| || ||| Sbjct 6669237 GATCAACCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGTATTTTTGCCTTCACATT 6669178 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| ||||| || || || |||| ||| || || Sbjct 6669177 ATCAATCGTGTCAGAACTCTCCACCTCCAATGTAATAGTCTTCCCAGTCAGAGTCTTCAC 6669118 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 6669117 AAATATCTGCAT 6669106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380874584945079