Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 123 4e-23 seq4 118 2e-21 seq9 114 2e-20 seq12525 102 1e-16 seq6 98.7 1e-15 seq19 95.1 2e-14 seq5 95.1 2e-14 >seq2 Length=24697652 Score = 123 bits (136), Expect = 4e-23 Identities = 362/558 (65%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || || ||||| |||||| ||||||||| ||||||| || ||||| ||||| Sbjct 21046904 TACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAG 21046963 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || || | || ||||| | |||| ||| || | ||||||||||| ||| || | | Sbjct 21046964 AAGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCA 21047023 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 || ||||| ||||| ||||| || || ||||| | | | |||||| || | ||| Sbjct 21047024 GAGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAA---GGATT-- 21047078 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 || | || ||||| | ||||| || ||| | || ||||| ||| Sbjct 21047079 CTGAACCGTCGATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCT 21047138 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 |||| || | || || || ||| || ||||||||| ||||| || || | | | Sbjct 21047139 CTATTGCGTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGA 21047198 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | |||||| |||||||| || | || || || ||||| || | || || | | | Sbjct 21047199 GACTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCG 21047258 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 |||| | ||| ||||| | || ||| | | | || ||| || || |||| Sbjct 21047259 CCTCAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGT 21047318 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 | | || ||||| || || | | | ||| ||||| || ||| || |||| Sbjct 21047319 CGGAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGG 21047378 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 || ||| | | ||||| || ||||| |||||||| | ||||| || || | || Sbjct 21047379 AGTCCCAGTGGCGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTT 21047438 Query 18687 CGGCCTGTTTGTACATTT 18704 | || | ||||||||||| Sbjct 21047439 CTGCTTTTTTGTACATTT 21047456 >seq4 Length=27333975 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| ||||| || || || ||| |||| Sbjct 24477618 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAAACCATTACTTTGGAGGTGGAAAGTTCT 24477677 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || ||||| ||||| || || || || || Sbjct 24477678 GATACAATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 24477737 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||| | |||||| || ||||| | ||||||||| Sbjct 24477738 CAGAGGTTGATTTTTGCAGGGAAGCAATTAGAAGATGGAAGGACTTTGGCTGATTATAAT 24477797 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 24477798 ATTCAGAAGGAGTCTACTCTTCA 24477820 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| || || ||||||| || ||| Sbjct 24477389 AATGCAAATCTTCGTAAAAACCCTCACCGGCAAAACCATAACCCTAGAAGTGGAGAGTTC 24477448 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || |||||||| ||||| || || ||||| || Sbjct 24477449 CGACACCATCGACAACGTAAAGGCGAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 24477508 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||||| || || || || || |||||| ||||| || | |||||||| Sbjct 24477509 GCAGAGATTGATTTTCGCTGGAAAACAACTTGAAGATGGAAGAACCCTAGCTGATTATAA 24477568 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 ||| || || | || ||||| | ||||| || Sbjct 24477569 TATCCAGAAGGAATCAACACTTCACCTTGTGTTGAG 24477604 >seq9 Length=21753712 Score = 114 bits (126), Expect = 2e-20 Identities = 360/558 (65%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||||||||||| || |||||| || | |||||||||| ||||| || ||||| Sbjct 19303911 TATAATAAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAG 19303970 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || || | |||||||||| || | |||||| ||||||||||||| ||| || | | Sbjct 19303971 AATGTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCA 19304030 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 || || ||||| || |||||||| || || || | | | ||| || || | ||| Sbjct 19304031 GAGAAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAA---GGATT-- 19304085 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 || | || |||||| | |||||||| ||| | ||| || || | | Sbjct 19304086 CTGAACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTT 19304145 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | || || | || || | ||| || ||| ||||| ||||| || |||| | | Sbjct 19304146 CAATCGCGTGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGA 19304205 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 |||||| ||||| || || |||| || || || || || | || || | | | Sbjct 19304206 GGCTATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCG 19304265 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 |||| | |||||| | | || ||| | | | || ||| ||| || |||| Sbjct 19304266 CCTCAGCGACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGT 19304325 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 | | | ||||| || || | | | ||| ||||| || ||||| || ||||| Sbjct 19304326 CGGAGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGAGAG 19304385 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 | ||| | | ||||| || ||||| |||||||| | ||||| || || | || Sbjct 19304386 AATCCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTT 19304445 Query 18687 CGGCCTGTTTGTACATTT 18704 |||| | |||||||||| Sbjct 19304446 CGGCTTTCTTGTACATTT 19304463 >seq12525 Length=279716 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||||||||| | || || || ||| Sbjct 230477 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACTATTACTCTTGAGGTTGAGAGTTCG 230536 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| || || || ||||| ||||| || || ||||| ||| Sbjct 230537 GATACTATTGATAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGACCAA 230596 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || |||||||| |||||| Sbjct 230597 CAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGAT 230632 >seq6 Length=33111450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || || ||||||| || ||||||||||| || || || ||| Sbjct 6669105 AATGCAGATATTTGTGAAGACTCTGACTGGGAAGACTATTACATTGGAGGTGGAGAGTTC 6669164 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || ||||| ||||||||||| || || || || || ||||| || Sbjct 6669165 TGACACGATTGATAATGTGAAGGCAAAAATACAAGACAAGGAGGGGATTCCACCAGATCA 6669224 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || ||||| | || || || ||| | |||||| || ||| | | || ||||| Sbjct 6669225 ACAGAGGTTGATCTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTCTTGCTGACTATAA 6669284 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 6669285 CATTCAGAAGGAGTCAACTCTTCA 6669308 >seq19 Length=18159812 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || || | ||||| | || || ||||| || || ||||||| ||| Sbjct 4557142 AAAAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATAACCCTAGAAGTTGAA 4557201 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| | || || |||||| || || |||||||||||||| | || ||| Sbjct 4557202 AGCAGTGACACAATCGACAATGTGAAAGCCAAGATCCAAGATAAAGAAGGAGTTCCACCA 4557261 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||| | ||||||| || ||||| || || |||||| ||||| || | ||| Sbjct 4557262 GATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTAGCTGAT 4557321 Query 155997 TATAATATATCCAAA-GAGGCGACGCTTCAT 156026 || ||||| || ||| || | || |||||| Sbjct 4557322 TACAATAT-TCAAAAGGAATCTACTCTTCAT 4557351 >seq5 Length=26376911 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||| ||||| || || ||| | ||||| || ||| Sbjct 2894378 ATGCAAATATTTGTCAAGACCTTGACCGGAAAGACCATCACACTTGAAGTTGAGAGTTCG 2894319 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 2894318 GACACCATAGATAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCCGACCAA 2894259 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | | || ||| | || || || Sbjct 2894258 CAGAGACTTATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACCTTAGCTGACTACAAC 2894199 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || | || || ||||||||| Sbjct 2894198 ATCCAGAAGGAATCCACTCTCCATTTAGTG 2894169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731747828766800