Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 seq19 120 5e-22 seq18 114 2e-20 seq5 113 8e-20 seq12525 96.9 6e-15 seq6 96.9 6e-15 >seq4 Length=27333975 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| ||| || |||||||||||| | |||| | | | || || ||||| || || Sbjct 24477815 AGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTCCTTCCATCTTCTAATTGCTTCCC 24477756 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||||| || ||||| || || ||||| || ||||| ||||| || || ||| ||| Sbjct 24477755 TGCAAAAATCAACCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTAGCTTT 24477696 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || ||||| || ||| || || | |||||||||||| ||||| || || Sbjct 24477695 CACATTATCAATTGTATCAGAACTTTCCACCTCCAAAGTAATGGTTTTCCCAGTCAAAGT 24477636 Query 172052 TTTAATGAATATCTGCAT 172069 || | || |||||||| Sbjct 24477635 CTTCACAAAAATCTGCAT 24477618 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | || | || | | || || | |||||| ||||| ||||| |||||| Sbjct 24477571 ATATTATAATCAGCTAGGGTTCTTCCATCTTCAAGTTGTTTTCCAGCGAAAATCAATCTC 24477512 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| |||||||| |||||||| || || ||||| || || || Sbjct 24477511 TGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTCGCCTTTACGTTGTCGATGGTG 24477452 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || |||||||| || |||||||| || || | ||||| | ||| || ||| Sbjct 24477451 TCGGAACTCTCCACTTCTAGGGTTATGGTTTTGCCGGTGAGGGTTTTTACGAAGATTTGC 24477392 Query 172068 ATT 172070 ||| Sbjct 24477391 ATT 24477389 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || || | ||| | | | | || |||| ||| ||||||||||| || || || Sbjct 3994405 AATATTGTAGTCAGCTAAGGTCCTTCCATCTTCCAGTTGCTTACCAGCAAAGATCAACCT 3994346 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || |||||||| || || || ||||| || |||||| || || Sbjct 3994345 CTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTCACATTATCAATGGT 3994286 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || ||||||||||| || ||||| || || || | || || || Sbjct 3994285 ATCGGAACTCTCAACCTCAAGAGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAAATTTG 3994226 Query 172067 CATT 172070 |||| Sbjct 3994225 CATT 3994222 >seq19 Length=18159812 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| ||||| | || | | || | ||| | ||||| || || |||||| ||| Sbjct 4557380 ATAATTCCACCACGGAGCCTAAGAACAAGATGAAGAGTAGATTCCTTTTGAATATTGTAA 4557321 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | || | || | | || || | |||||||||||| ||||| || | ||||| || Sbjct 4557320 TCAGCTAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCT 4557261 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| | ||||||||||||||| || || ||| ||||| || || || | Sbjct 4557260 GGTGGAACTCCTTCTTTATCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCACTGCTT 4557201 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || |||||||| || || |||||||| |||| ||||| | ||| ||||||||||| || Sbjct 4557200 TCAACTTCTAGGGTTATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 4557142 >seq18 Length=16588007 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | | || || |||| || | |||||| || || || || || | Sbjct 12189711 AATATTGTAATCGGCGAGAGTGCGACCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACG 12189770 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| |||||||| || ||||| || || || ||||| || || Sbjct 12189771 CTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGT 12189830 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || ||||| || || || |||||||||||||| |||| ||||| | ||| ||||| Sbjct 12189831 ATCGGAGGATTCAACCTCGAGGGTAATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTG 12189890 Query 172067 CAT 172069 ||| Sbjct 12189891 CAT 12189893 >seq5 Length=26376911 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || ||||| | || | ||| || || || ||||| Sbjct 2894377 ATACCACCACGAAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 2894436 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||| || ||||||||||| | | ||||||||| ||| Sbjct 2894437 GCAAGGGTACGCCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGACGCTGTTGGTCTGGT 2894496 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| ||||||||| ||| ||||| || || Sbjct 2894497 GGGATCCCTTCCTTGTCTTGAATTTTAGCCTTTACATTATCTATGGTATCAGAACTCTCA 2894556 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||| | ||| |||| || || ||||| Sbjct 2894557 ACTTCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACAAAGATTTGCAT 2894606 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | |||||||| | ||| | || || || || || || Sbjct 2894149 ATACCACCACGAAGACGAAGCACTAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCA 2894208 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | || || |||||||| || | |||||||||||| ||| Sbjct 2894209 GCTAAGGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGTCTCTGTTGGTCGGGT 2894268 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| || |||||| ||| || || || || Sbjct 2894269 GGGATGCCCTCTTTGTCTTGAATTTTGGCCTTCACATTATCTATGGTGTCCGAACTCTCA 2894328 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || || || || | ||||| ||||| Sbjct 2894329 ACTTCAAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAATATTTGCAT 2894378 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || || || || || || | || | |||| ||| || ||| || || ||| Sbjct 2893693 ATTCCTCCCCTCAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCT 2893752 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | ||||| ||||||||||| || || || ||||| || Sbjct 2893753 GCAAGAGTACGTCCATCTTCAAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGGTCTGGC 2893812 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || ||| ||| ||||| || || ||||| ||| Sbjct 2893813 GGGATACCCTCTTTGTCTTGAATCTTAGCTTTCACATTGTCAATTGTGTCTGAGCTCTCT 2893872 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| | ||| || | || |||||||| Sbjct 2893873 ACCTCCAGAGTGATTGTCTTGCCAGTAAGTGTCTTGACAAAAATCTGCAT 2893922 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | || | ||| | |||||| || ||||| || Sbjct 2893921 ATACCACCACGGAGACGCAAGACAAGGTGGAGAGTTGACTCTTTCTGGATGTTATAGTCA 2893980 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | ||| || ||||||||||| | ||||||||||| ||| Sbjct 2893981 GCTAAGGTACGACCATCCTCGAGTTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGT 2894040 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| || ||||| || || || || || Sbjct 2894041 GGGATGCCCTCTTTGTCTTGAATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCC 2894100 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || || || || | || || ||||| Sbjct 2894101 ACTTCAAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 2894150 >seq12525 Length=279716 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || || ||||||||||| || || |||||||| ||||| || || Sbjct 230622 TGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCCTTATCCTGAATC 230563 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| |||||||| || || || || |||||||| ||||| ||| Sbjct 230562 TTTGCCTTCACATTATCAATAGTATCCGAACTCTCAACCTCAAGAGTAATAGTTTTCCCA 230503 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | || |||||||| Sbjct 230502 GTCAAGGTCTTCACAAAAATCTGCAT 230477 >seq6 Length=33111450 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| ||||| || | || | ||| | ||| || ||| ||||| || | Sbjct 6669332 CCACCACGAAGACGTAAGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGCA 6669273 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || | | | || ||||| ||||| ||||| || || || |||||||| || ||||| Sbjct 6669272 AGAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAAGATCAACCTCTGTTGATCTGGTGGA 6669213 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || ||||||||||| || |||||| || || || || || || Sbjct 6669212 ATCCCCTCCTTGTCTTGTATTTTTGCCTTCACATTATCAATCGTGTCAGAACTCTCCACC 6669153 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||| || || ||||| | || || | |||||||||||| Sbjct 6669152 TCCAATGTAATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCATT 6669105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904982432363400